Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 0.0e+00 1622.1 894 100.0
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 0.0e+00 1582.8 913 96.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 0.0e+00 1554.3 897 95.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 0.0e+00 1357.8 896 85.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1337.0 898 82.7
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 0.0e+00 1168.3 813 80.2
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1146.0 898 73.3
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 4.6e-302 1041.2 903 63.3
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 9.0e-298 1026.9 905 64.6
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.2e-297 1026.5 913 63.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.9e-290 1000.7 907 62.5
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 9.1e-290 1000.3 905 64.3
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.0e-285 985.3 919 61.9
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.7e-281 970.7 607 85.7
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 7.7e-281 970.7 892 61.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.7e-275 951.8 918 61.2
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 6.3e-275 951.0 906 60.8
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.7e-273 945.7 920 59.5
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.2e-271 938.7 899 61.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.1e-270 936.0 896 59.2
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.0e-269 933.7 903 60.6
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 9.8e-268 927.2 908 58.8
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 9.1e-266 920.6 901 60.9
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 5.9e-265 917.9 907 58.0
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.3e-264 916.8 908 58.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 8.5e-264 914.1 848 61.2
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.4e-261 906.7 907 56.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.6e-257 893.3 917 58.5
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 7.7e-257 891.0 917 57.7
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 5.0e-256 888.3 913 57.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 6.6e-256 887.9 915 57.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.9e-255 886.3 907 58.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.5e-255 885.9 872 59.6
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 7.5e-252 874.4 873 58.8
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.1e-250 868.6 913 59.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.1e-250 868.6 913 59.7
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 7.0e-250 867.8 901 56.0
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.7e-249 865.9 889 56.2
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.3e-247 858.6 913 57.5
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 5.6e-247 858.2 910 55.1
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 6.2e-246 854.7 918 56.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.0e-245 854.0 869 57.8
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.4e-245 853.6 909 55.8
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 5.2e-245 851.7 892 55.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.2e-244 850.5 843 58.1
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.6e-244 849.4 899 54.9
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.7e-243 846.7 866 56.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.7e-243 845.5 906 57.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 9.2e-242 840.9 898 54.6
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.2e-241 840.5 733 64.0
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 6.0e-241 838.2 919 55.9
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 5.0e-240 835.1 908 56.7
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.5e-239 833.6 904 57.2
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.3e-239 832.4 874 55.9
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 4.3e-239 832.0 909 57.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.1e-238 829.7 923 58.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 4.7e-238 828.6 913 56.1
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.3e-237 826.2 794 59.9
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 3.1e-237 825.9 878 57.2
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.2e-237 825.1 879 54.3
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 5.2e-237 825.1 901 55.2
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.4e-236 822.4 901 55.6
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.3e-235 820.5 908 53.7
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.2e-235 819.7 912 54.3
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 4.9e-235 818.5 915 54.5
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.4e-234 817.0 910 53.7
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 7.1e-234 814.7 872 58.0
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 2.1e-233 813.1 824 58.3
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 5.1e-232 808.5 905 53.3
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.9e-231 806.6 915 54.4
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.2e-230 803.9 908 52.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 5.2e-229 798.5 920 53.5
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.2e-228 797.3 899 52.5
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 5.8e-228 795.0 868 54.8
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.2e-227 793.1 867 56.5
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.2e-227 793.1 891 55.4
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.4e-227 791.2 901 52.6
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.1e-226 790.8 883 54.9
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.4e-226 790.4 876 53.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.4e-226 789.6 905 52.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.2e-226 789.3 897 54.1
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 7.8e-225 784.6 889 55.6
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.5e-223 780.4 873 54.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.2e-222 777.3 882 53.1
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.2e-222 777.3 815 57.5
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 6.2e-222 775.0 899 55.3
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 4.4e-220 768.8 864 53.2
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.6e-217 760.4 879 53.5
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 8.7e-216 754.6 879 52.9
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 4.3e-215 752.3 878 52.1
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 7.3e-215 751.5 928 49.9
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 6.2e-214 748.4 901 49.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.1e-213 747.7 899 53.4
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.3e-211 740.7 901 49.7
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-210 737.6 887 52.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.5e-209 732.6 884 50.3
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 6.0e-209 731.9 895 51.4
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 6.0e-209 731.9 907 50.9
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.3e-208 730.7 913 51.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 3.9e-208 729.2 878 51.8
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 6.7e-208 728.4 895 49.1
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 3.1e-205 719.5 886 49.1
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 7.9e-201 704.9 879 48.1
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 4.8e-198 695.7 849 50.6
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.5e-196 689.1 910 49.0
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.0e-195 688.0 865 48.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 7.9e-193 678.3 883 47.9
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.1e-192 675.6 878 47.4
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 5.9e-188 662.1 756 52.2
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 4.6e-185 652.5 562 65.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.3e-182 642.1 838 47.7
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.3e-176 623.6 885 45.5
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-170 604.7 879 45.2
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.1e-170 604.7 660 56.5
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.6e-169 600.9 877 45.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 5.2e-168 595.9 885 44.5
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 8.8e-160 568.5 654 54.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.0e-155 552.7 1033 39.1
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.5e-130 470.7 405 64.4
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 4.7e-129 466.5 844 39.3
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.9e-123 446.8 904 37.7
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 5.6e-122 443.0 749 41.5
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.6e-121 441.4 1038 35.1
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 8.3e-118 429.1 433 54.0
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 7.8e-116 422.5 459 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 9.2e-109 399.1 941 36.6
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 7.3e-106 389.4 1004 36.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 8.4e-94 349.4 343 56.9
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.7e-92 344.4 248 72.2
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.6e-92 343.6 278 65.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 7.9e-92 342.8 481 46.4
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-90 339.0 899 31.8
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.1e-90 339.0 899 31.8
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.3e-89 335.5 342 53.5
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.3e-83 315.5 973 30.0
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 4.5e-71 273.9 772 33.4
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 6.5e-70 270.0 246 60.2
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 8.5e-70 269.6 176 81.8
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.4e-67 262.3 455 40.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.5e-66 258.1 410 43.4
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.7e-65 255.4 200 66.0
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 3.7e-65 254.2 410 43.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 3.1e-64 251.1 425 43.5
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-62 245.7 327 46.2
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-61 242.7 417 42.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.7e-60 238.0 369 44.2
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 4.4e-58 230.7 408 42.9
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 9.7e-58 229.6 883 28.0
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 8.8e-51 206.5 370 40.3
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 7.4e-50 203.4 131 78.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 4.8e-49 200.7 312 46.2
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.7e-46 192.2 312 42.9
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.5e-42 179.1 177 61.0
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 7.5e-42 176.8 172 58.7
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.1e-40 171.0 234 44.4
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.1e-40 169.9 322 43.2
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.7e-38 165.6 992 25.3
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 3.8e-38 164.5 192 52.1
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.8e-38 164.5 718 28.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 8.0e-36 156.8 212 43.9
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 5.2e-35 154.1 316 38.9
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 5.2e-35 154.1 166 55.4
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 5.2e-35 154.1 315 38.7
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 7.5e-34 150.2 221 42.5
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 2.2e-33 148.7 193 50.8
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-29 134.4 289 37.4
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 7.2e-29 133.7 289 37.7
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.6e-28 132.5 839 24.8
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.1e-28 132.1 128 58.6
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.3e-25 120.6 122 64.8
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.7e-22 112.5 82 73.2
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 4.7e-20 104.4 78 69.2
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.9e-17 94.4 316 32.9
CAN.G1155.3 Capsicum annuum HOM05D000198 ORTHO05D004760 1.9e-16 92.4 115 52.2
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.4e-16 92.0 203 34.0
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 3.3e-13 81.6 170 37.6
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.2e-08 65.1 192 32.3
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 3.0e-06 58.5 109 39.4


User provided reference genes

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