Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 0.0e+00 2628.2 1757 100.0
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 0.0e+00 2412.5 1891 88.7
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 0.0e+00 1464.1 1907 64.4
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 0.0e+00 1289.6 1833 51.8
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 7.0e-286 988.4 2038 49.5
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 3.4e-256 889.8 673 88.3
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 9.3e-230 802.0 1814 38.2
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 2.1e-64 252.7 873 30.0
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 2.9e-50 205.7 673 29.9
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.4e-36 159.5 631 32.2
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.2e-35 157.1 910 27.7
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.5e-35 155.6 752 27.4
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 7.8e-35 154.5 590 28.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 2.3e-34 152.9 445 31.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 1.9e-33 149.8 864 24.8
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.1e-32 146.4 552 28.6
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.1e-31 144.1 623 26.8
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.8e-31 143.3 765 24.8
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.6e-30 139.4 600 28.2
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.7e-29 136.7 635 24.9
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 4.9e-29 135.2 865 25.1
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 8.3e-29 134.4 571 32.2
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 5.4e-28 131.7 551 29.2
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.6e-27 130.2 986 24.4
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.7e-26 126.7 968 23.8
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 5.1e-26 125.2 579 25.9
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.1e-25 124.0 655 25.6
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.5e-25 123.6 707 24.3
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 2.1e-24 119.8 947 24.9
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.8e-24 119.4 165 41.8
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 3.6e-24 119.0 217 35.9
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.4e-23 117.1 547 26.9
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 5.2e-23 115.2 876 24.0
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 6.8e-23 114.8 508 32.5
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.5e-22 113.6 507 26.4
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 2.0e-22 113.2 249 31.7
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 9.9e-22 110.9 189 37.6
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 9.9e-22 110.9 174 40.2
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 1.7e-21 110.2 790 23.2
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.2e-21 109.8 330 28.2
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.2e-21 109.8 166 40.4
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 2.2e-21 109.8 423 27.7
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 4.9e-21 108.6 191 34.6
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.9e-21 108.6 551 26.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 8.4e-21 107.8 852 24.6
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.1e-20 107.5 335 28.7
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.4e-20 107.1 173 35.8
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.4e-20 106.3 173 35.8
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.5e-19 102.4 168 34.5
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 3.5e-19 102.4 299 30.8
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 3.5e-19 102.4 614 25.6
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 3.5e-19 102.4 168 37.5
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 6.0e-19 101.7 250 30.0
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 7.8e-19 101.3 309 32.4
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.3e-18 100.5 167 49.7
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.7e-18 100.1 535 27.1
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.1e-17 97.4 190 40.0
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.5e-17 97.1 598 25.3
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 9.6e-17 94.4 60 70.0
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.6e-16 93.6 827 24.3
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 4.8e-16 92.0 500 25.2
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 1.8e-15 90.1 217 30.9
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.1e-15 89.4 498 24.5
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 5.3e-15 88.6 281 29.9
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 5.3e-15 88.6 217 30.4
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 5.3e-15 88.6 398 26.9
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 9.0e-15 87.8 248 32.3
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 9.0e-15 87.8 284 28.2
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.0e-14 86.7 320 28.1
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.6e-14 86.3 76 51.3
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 2.6e-14 86.3 479 23.4
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 7.6e-14 84.7 272 28.7
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 7.6e-14 84.7 325 28.3
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 7.6e-14 84.7 711 25.0
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 9.9e-14 84.3 110 43.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.3e-13 84.0 566 26.5
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.9e-13 82.8 546 25.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.8e-13 82.4 170 34.1
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 4.9e-13 82.0 546 26.0
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.4e-13 81.6 271 27.7
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 6.4e-13 81.6 472 22.2
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 1.1e-12 80.9 454 24.7
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.9e-12 80.1 572 26.4
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.9e-12 80.1 369 27.1
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 3.2e-12 79.3 173 28.3
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 3.2e-12 79.3 509 22.8
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.2e-12 79.3 109 40.4
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 4.2e-12 79.0 219 29.7
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 4.2e-12 79.0 168 31.0
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 4.2e-12 79.0 130 38.5
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 5.4e-12 78.6 224 29.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 7.1e-12 78.2 264 28.0
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 7.1e-12 78.2 189 37.0
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 9.3e-12 77.8 301 27.2
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.2e-11 77.4 240 29.6
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 1.2e-11 77.4 104 41.3
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.6e-11 77.0 139 38.1
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.7e-11 76.3 640 23.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 3.5e-11 75.9 297 26.9
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 7.8e-11 74.7 112 40.2
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 7.8e-11 74.7 242 31.8
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 7.8e-11 74.7 74 45.9
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.3e-10 73.9 445 26.1
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 2.3e-10 73.2 181 28.7
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 3.0e-10 72.8 106 35.8
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 3.0e-10 72.8 127 34.6
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 3.0e-10 72.8 271 29.9
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.9e-10 72.4 120 37.5
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.1e-10 72.0 98 41.8
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 5.1e-10 72.0 91 40.7
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.6e-10 71.6 550 24.2
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 6.6e-10 71.6 141 35.5
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 8.7e-10 71.2 105 38.1
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.1e-09 70.9 333 27.3
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.9e-09 70.1 124 35.5
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.9e-09 70.1 286 26.6
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.9e-09 70.1 60 50.0
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 1.9e-09 70.1 69 46.4
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 2.5e-09 69.7 120 32.5
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.3e-09 69.3 248 29.8
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 4.3e-09 68.9 254 29.5
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 5.6e-09 68.6 48 56.2
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 5.6e-09 68.6 78 41.0
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 9.6e-09 67.8 71 43.7
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 9.6e-09 67.8 111 37.8
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.3e-08 67.4 87 41.4
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.6e-08 67.0 256 29.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.1e-08 66.6 47 61.7
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.8e-08 66.2 57 50.9
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.8e-08 66.2 57 50.9
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 4.8e-08 65.5 207 30.0
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 4.8e-08 65.5 51 56.9
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 6.2e-08 65.1 55 52.7
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 6.2e-08 65.1 73 41.1
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 6.2e-08 65.1 79 41.8
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 6.2e-08 65.1 80 40.0
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 8.1e-08 64.7 233 26.6
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.1e-07 64.3 47 53.2
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.4e-07 63.9 252 27.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.8e-07 63.5 82 46.3
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 3.1e-07 62.8 693 23.4
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 4.0e-07 62.4 118 33.9
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.0e-07 62.4 313 24.9
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 5.3e-07 62.0 78 37.2
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 5.3e-07 62.0 162 44.4
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 6.9e-07 61.6 52 55.8
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 6.9e-07 61.6 203 26.1
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 9.0e-07 61.2 89 38.2
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 9.0e-07 61.2 271 28.0
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.2e-06 60.8 294 26.2
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.2e-06 60.8 183 31.1
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.5e-06 60.5 92 41.3
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.5e-06 60.5 47 57.4
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.0e-06 60.1 77 41.6
Os08g0206700 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.0e-06 60.1 59 49.2
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 2.0e-06 60.1 48 54.2
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 2.6e-06 59.7 254 27.6
CDE02G3421 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 2.6e-06 59.7 100 41.0
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.6e-06 59.7 80 45.0
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.6e-06 59.7 48 56.2
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 3.4e-06 59.3 299 25.8
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 4.5e-06 58.9 85 37.6
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 5.8e-06 58.5 85 38.8
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 5.8e-06 58.5 114 33.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 5.8e-06 58.5 82 39.0
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 7.6e-06 58.2 128 32.8
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 7.6e-06 58.2 711 22.1
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 9.9e-06 57.8 86 38.4
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 9.9e-06 57.8 299 25.8


User provided reference genes

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