Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 0.0e+00 1907.9 961 100.0
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 0.0e+00 1870.9 961 98.0
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 0.0e+00 1814.7 961 95.2
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 0.0e+00 1630.2 963 86.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 0.0e+00 1504.2 966 81.1
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 0.0e+00 1437.9 992 75.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 0.0e+00 1429.8 966 77.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 0.0e+00 1100.1 973 59.9
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.9e-309 1065.8 978 59.0
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 7.7e-303 1043.9 971 59.5
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.5e-301 1039.6 978 58.6
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 8.2e-297 1023.8 960 57.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 7.0e-296 1020.8 1006 56.7
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.4e-291 1006.5 964 57.5
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.0e-290 1002.7 946 59.0
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 4.4e-290 1001.5 959 55.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 5.7e-290 1001.1 962 58.8
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.8e-289 998.0 952 56.4
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 7.2e-285 984.2 937 58.4
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 9.4e-285 983.8 956 56.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.6e-284 981.9 978 55.0
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.7e-284 981.5 974 55.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 9.8e-282 973.8 972 54.9
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 6.3e-281 971.1 982 55.9
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.1e-280 968.8 980 55.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.5e-279 965.3 985 54.4
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 4.5e-279 964.9 955 54.9
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.9e-279 964.5 989 55.6
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.0e-278 963.8 946 55.9
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.3e-278 962.6 986 54.3
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.5e-277 959.9 990 55.6
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 5.5e-277 958.0 961 54.8
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.6e-276 956.4 990 55.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.8e-275 953.0 976 54.0
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.3e-275 952.6 946 55.3
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.4e-272 943.3 980 53.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.4e-272 943.3 927 56.4
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.6e-271 939.9 991 53.8
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 5.9e-271 937.9 919 55.8
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 3.3e-269 932.2 966 53.1
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 9.5e-269 930.6 980 52.9
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.1e-268 929.5 940 56.4
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.7e-268 928.3 978 53.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 3.1e-267 925.6 959 53.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 6.8e-267 924.5 991 53.1
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 4.4e-266 921.8 946 53.0
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.7e-265 919.8 896 56.5
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.9e-265 918.3 934 53.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.4e-264 914.8 1005 51.6
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.0e-262 910.6 942 53.1
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 3.9e-262 908.7 969 54.3
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 5.0e-262 908.3 987 51.1
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.6e-260 903.3 1001 50.6
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 4.0e-259 898.7 941 53.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 5.2e-259 898.3 932 53.4
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 6.8e-259 897.9 696 65.2
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.2e-258 897.1 945 52.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.5e-258 896.7 976 51.4
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.4e-258 895.2 695 65.9
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.8e-258 894.8 953 51.8
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 9.8e-258 894.0 934 54.0
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.3e-257 893.6 713 64.8
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 2.2e-257 892.9 960 51.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 3.7e-257 892.1 959 50.7
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-256 890.2 973 52.6
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.4e-256 889.4 968 50.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.2e-256 889.0 973 52.7
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 3.2e-256 889.0 941 52.3
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.4e-256 888.3 883 53.3
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.4e-256 888.3 973 52.4
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.4e-256 888.3 820 58.2
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.1e-256 887.9 968 52.0
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 7.8e-255 884.4 963 51.3
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 3.9e-254 882.1 976 50.1
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 7.3e-253 877.9 954 51.8
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 6.2e-252 874.8 991 50.8
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 6.2e-252 874.8 991 50.8
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 6.8e-251 871.3 934 53.5
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 5.8e-250 868.2 977 49.4
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.7e-249 865.5 991 49.5
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 4.6e-247 858.6 960 50.4
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 6.0e-247 858.2 924 51.6
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 5.1e-246 855.1 971 49.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 3.3e-245 852.4 952 50.3
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.2e-244 850.5 917 50.7
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 6.8e-243 844.7 955 49.9
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.9e-241 839.3 954 50.0
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 8.4e-241 837.8 953 49.6
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.9e-240 836.6 951 49.9
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 7.1e-240 834.7 833 54.7
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.4e-235 820.5 704 59.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.8e-235 820.1 948 49.2
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 7.6e-234 814.7 976 48.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 9.3e-232 807.7 948 49.1
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.1e-231 806.6 990 47.2
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 4.6e-231 805.4 945 48.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 9.6e-229 797.7 967 48.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 3.6e-228 795.8 913 48.8
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.2e-226 790.8 967 47.6
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 7.6e-226 788.1 799 54.9
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 6.7e-214 748.4 602 65.9
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-213 747.7 949 46.2
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 9.6e-213 744.6 712 55.2
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 3.8e-201 706.1 690 52.8
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.4e-200 704.1 732 55.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.0e-197 693.7 941 45.3
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.7e-196 689.5 675 52.7
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.4e-195 686.8 932 44.7
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 3.0e-190 669.8 663 51.7
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 2.0e-181 640.6 463 70.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 8.5e-177 625.2 451 68.1
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.1e-168 598.2 698 50.0
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 6.1e-167 592.4 710 45.1
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.7e-164 584.3 827 42.8
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-157 561.6 714 49.4
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.1e-155 553.1 483 58.8
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 4.0e-150 536.6 637 46.2
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.1e-147 526.6 749 44.6
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 5.4e-147 526.2 852 39.2
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.6e-146 524.6 668 46.1
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.0e-145 521.9 988 36.7
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.3e-134 484.2 695 41.9
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 5.4e-115 419.9 517 47.4
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 4.0e-110 403.7 716 35.1
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.2e-100 371.3 541 44.5
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 2.9e-100 370.9 590 38.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 3.2e-99 367.5 287 65.9
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.9e-96 358.2 277 66.4
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 9.3e-91 339.3 421 47.3
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-86 325.9 209 74.6
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.1e-75 289.3 201 71.1
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 7.2e-75 286.6 310 55.5
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 4.8e-71 273.9 241 60.2
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.5e-69 267.7 242 59.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.5e-68 263.5 175 73.1
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.8e-65 255.4 196 72.4
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-61 242.3 244 52.5
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.7e-53 214.9 136 75.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.2e-51 207.6 168 62.5
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 5.2e-49 200.7 131 69.5
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 9.2e-46 189.9 170 53.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 8.6e-44 183.3 220 48.2
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 7.0e-38 163.7 114 64.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 3.4e-32 144.8 530 26.6
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.0e-28 131.7 78 79.5
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 8.9e-17 93.6 312 28.2
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 9.9e-16 90.1 300 32.7
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 2.2e-15 89.0 546 23.1
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-13 82.4 48 83.3
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.7e-12 79.3 79 45.6
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.1e-09 70.1 49 63.3
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 1.9e-06 59.3 546 22.0
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.4e-06 58.9 65 49.2


User provided reference genes

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