Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 3608.5 1830 100.0
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 3409.0 1742 99.2
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 3225.3 1831 90.1
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 2940.2 1896 80.9
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 2130.9 1389 79.6
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2083.9 1861 59.5
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2017.3 1841 57.5
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 2008.0 1866 57.4
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 2007.3 1854 58.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 1986.1 1847 57.0
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 1971.4 2053 52.9
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 1970.7 1842 57.2
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1969.1 1843 56.7
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1957.2 1855 56.8
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1939.1 1875 55.7
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 1933.7 1845 56.4
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 1930.2 1847 55.4
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 1925.2 1849 55.5
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 1907.5 1843 55.2
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1904.0 1842 54.9
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1898.6 1845 55.2
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1897.5 1861 55.7
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 1884.8 1651 59.8
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1858.2 1878 54.4
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 1856.3 1842 53.5
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1855.9 1853 53.9
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1836.6 1935 54.0
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1831.6 1854 54.2
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1831.6 1846 54.2
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 1830.8 1842 53.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 1829.7 1844 53.3
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1821.2 1854 54.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 1818.1 1841 53.0
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1817.0 1845 53.0
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1811.6 1848 53.2
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1811.2 1846 53.3
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1806.6 1834 53.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1786.9 1840 53.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1776.5 1834 52.8
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1771.9 1738 55.1
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1770.4 1846 52.5
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1770.4 1848 51.7
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1763.8 1854 51.8
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1760.3 1844 52.1
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1759.2 1856 52.1
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1759.2 1840 52.8
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1756.1 1838 52.9
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1744.9 1850 51.4
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1740.7 1607 57.7
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1736.5 1853 51.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1733.0 1853 50.9
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1731.5 1848 50.9
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1715.7 1851 50.8
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1715.7 1852 50.6
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1715.3 1851 51.1
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1709.5 1519 60.0
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1701.8 1888 50.2
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1700.6 1874 50.0
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1697.6 1839 50.6
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1694.9 1858 50.4
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1688.7 1850 51.2
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1687.5 1852 50.3
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 1682.9 1837 50.0
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1657.9 1852 50.5
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1657.5 1561 57.5
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1656.3 1852 49.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1654.8 1866 51.3
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1633.6 1847 49.5
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1633.2 1846 49.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1604.7 1879 48.5
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1594.7 1534 55.5
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1575.8 1770 48.8
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1525.4 1654 51.2
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1453.3 1839 45.3
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1357.4 1139 62.6
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 1324.7 1434 49.7
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 1290.8 1418 49.3
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1208.0 1467 47.0
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1132.9 1072 57.2
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1120.1 991 60.6
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 0.0e+00 1081.2 1363 46.8
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 0.0e+00 1077.8 1913 36.2
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 6.8e-308 1061.6 1743 39.0
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.7e-301 1038.9 1009 57.4
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 2.4e-297 1026.5 1487 42.7
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.2e-289 999.6 954 55.9
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.9e-282 975.7 794 65.0
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 1.0e-255 888.3 806 59.2
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 3.0e-223 780.4 909 48.6
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 6.5e-202 709.5 752 53.7
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 8.5e-202 709.1 590 63.9
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.2e-192 678.7 516 68.4
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.6e-192 678.3 411 87.3
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.9e-172 611.7 1507 30.5
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.2e-164 582.8 340 89.7
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.9e-140 505.4 406 62.8
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 2.7e-139 501.5 408 62.3
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 4.8e-136 490.7 634 44.6
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.3e-129 468.0 431 60.3
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.3e-128 466.1 571 45.5
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 6.9e-127 460.3 400 60.0
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.8e-125 454.5 624 41.8
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 6.5e-125 453.8 478 53.1
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.8e-120 438.3 433 59.8
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 3.0e-114 418.3 310 69.0
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 8.5e-109 400.2 476 46.8
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 3.3e-105 388.3 553 40.3
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.5e-94 351.7 366 51.9
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.5e-94 351.3 284 63.4
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 5.2e-90 337.8 309 59.9
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.8e-82 310.8 486 40.3
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.5e-81 309.7 348 50.3
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.7e-80 306.2 511 34.6
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.0e-78 299.3 484 37.6
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 1.2e-73 283.5 388 41.2
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 2.6e-73 282.3 373 43.4
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 7.5e-73 280.8 178 77.5
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 4.9e-72 278.1 551 33.2
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 7.0e-71 274.2 179 76.5
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.7e-69 269.6 218 63.3
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 4.7e-67 261.5 254 53.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 2.8e-59 235.7 178 63.5
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 5.2e-58 231.5 777 26.6
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 6.8e-58 231.1 396 36.6
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 4.9e-56 224.9 137 78.1
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.4e-50 206.1 299 39.1
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.6e-49 202.6 904 25.2
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.2e-48 199.5 137 70.1
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.1e-46 193.0 402 35.1
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.3e-45 190.3 106 86.8
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 1.7e-45 189.9 112 84.8
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.6e-45 188.0 186 55.4
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.4e-39 169.5 148 52.7
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 4.8e-35 155.2 138 58.0
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.9e-34 151.4 152 55.9
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 3.5e-30 139.0 151 42.4
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 4.6e-30 138.7 207 37.2
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.3e-29 137.1 179 44.1
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 5.1e-29 135.2 172 45.3
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-27 130.6 85 74.1
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.3e-27 130.6 85 75.3
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.8e-26 126.7 130 53.1
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 3.1e-26 125.9 136 51.5
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.4e-25 122.5 82 70.7
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.9e-25 120.9 82 70.7
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.4e-24 117.9 78 70.5
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 6.0e-22 111.7 63 82.5
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.0e-21 110.9 74 71.6
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 2.5e-20 106.3 53 96.2
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.5e-20 106.3 157 40.8
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.5e-20 106.3 83 62.7
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.5e-16 91.7 132 43.9
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-15 89.7 70 64.3
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 3.5e-14 85.9 63 63.5
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 4.6e-14 85.5 70 62.9
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 3.0e-13 82.8 123 39.0
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 3.0e-13 82.8 123 39.0
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 3.9e-13 82.4 64 64.1
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.1e-12 80.9 241 28.6
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 1.5e-12 80.5 89 44.9
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-12 79.7 49 75.5
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 2.5e-12 79.7 49 75.5
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 2.2e-11 76.6 105 40.0
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 2.2e-11 76.6 189 29.6
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 3.7e-11 75.9 48 72.9
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 4.8e-11 75.5 63 57.1
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.2e-09 70.9 147 30.6
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.9e-09 68.6 178 32.6
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 5.0e-08 65.5 185 28.6
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 1.4e-07 63.9 184 28.8
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 3.2e-07 62.8 144 35.4
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 1.2e-06 60.8 197 27.9
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.6e-06 60.5 123 34.1
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 3.6e-06 59.3 64 43.8
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 6.1e-06 58.5 78 42.3


User provided reference genes

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