Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 4.7e-85 317.8 154 100.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 4.7e-85 317.8 154 100.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.7e-82 309.3 154 96.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 7.2e-70 267.3 156 84.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.0e-68 263.5 156 81.4
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.2e-68 261.2 156 80.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 8.8e-68 260.4 155 82.6
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.4e-65 253.1 156 78.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.0e-55 220.3 157 68.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.9e-54 216.1 152 67.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 5.6e-54 214.5 157 65.6
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.8e-53 212.2 153 64.1
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 4.7e-53 211.5 157 66.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.4e-52 209.9 153 66.0
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 4.0e-52 208.4 157 66.2
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 5.2e-52 208.0 153 66.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.2e-52 208.0 152 63.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.9e-52 207.2 124 85.5
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.6e-51 205.7 124 84.7
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-50 203.4 152 62.5
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.7e-50 203.0 157 62.4
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 8.3e-50 200.7 152 62.5
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.1e-49 200.3 156 61.5
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 4.1e-49 198.4 156 64.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.6e-48 196.4 152 59.9
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.6e-48 196.4 153 60.1
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.7e-48 195.7 152 59.2
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 7.8e-48 194.1 157 61.8
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.0e-47 193.7 147 59.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.3e-47 193.4 151 58.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.0e-47 192.2 148 65.5
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 3.9e-47 191.8 153 58.2
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.1e-46 190.3 146 61.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.3e-46 188.7 153 58.8
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 4.3e-46 188.3 152 58.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.6e-46 188.0 152 58.6
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 7.3e-46 187.6 152 59.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.3e-46 187.6 165 55.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.2e-45 186.8 153 57.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 3.6e-45 185.3 152 55.9
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.7e-45 184.9 152 57.2
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.2e-45 184.5 152 56.6
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.1e-44 183.7 157 58.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.4e-44 183.3 152 54.6
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.4e-44 183.3 152 59.2
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-44 182.2 152 56.6
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.2e-44 181.4 152 55.9
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.2e-44 181.4 152 58.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 6.8e-44 181.0 153 56.9
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.2e-43 180.3 152 55.9
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.5e-43 179.9 152 57.2
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.4e-43 178.7 152 56.6
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.4e-43 178.3 148 58.1
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 5.8e-43 177.9 153 57.5
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.8e-43 177.9 144 60.4
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 5.8e-43 177.9 152 55.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.7e-42 176.4 152 54.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.2e-42 176.0 153 53.6
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.2e-42 176.0 152 54.6
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.9e-42 175.6 152 53.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.9e-42 174.9 153 55.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.4e-42 174.5 152 52.0
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.4e-42 174.5 152 55.9
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 8.3e-42 174.1 153 52.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.1e-41 173.7 151 53.0
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.1e-41 173.7 153 55.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-41 173.3 152 53.9
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.4e-41 173.3 153 54.9
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.9e-41 172.9 151 52.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.1e-41 171.8 153 54.9
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.1e-41 171.8 152 56.6
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.4e-41 171.4 152 51.3
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 7.1e-41 171.0 152 53.9
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.7e-40 169.1 153 54.9
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.7e-40 169.1 158 48.1
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-39 166.8 150 50.0
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.7e-39 166.4 151 50.3
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.3e-39 166.0 151 49.7
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.9e-39 165.2 152 49.3
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 5.1e-39 164.9 152 48.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 8.6e-39 164.1 153 48.4
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.1e-38 163.7 153 50.3
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.5e-38 163.3 153 53.6
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.9e-38 162.9 149 51.7
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.3e-38 162.2 151 48.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.3e-38 162.2 151 48.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 9.5e-38 160.6 151 49.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-37 160.2 151 49.0
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-37 160.2 151 49.0
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-37 160.2 151 49.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.2e-37 160.2 153 50.3
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-37 159.8 151 49.0
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.1e-37 159.5 151 49.0
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 8.1e-37 157.5 152 50.0
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.1e-36 157.1 153 49.7
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.8e-36 156.4 150 50.7
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.3e-36 156.0 150 48.7
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.2e-36 154.8 153 49.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 5.2e-36 154.8 156 46.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.6e-35 151.0 149 47.7
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.7e-34 148.7 151 47.0
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 3.7e-34 148.7 152 46.7
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 4.9e-34 148.3 152 48.0
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 4.9e-34 148.3 154 48.1
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 8.4e-34 147.5 154 44.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.1e-33 147.1 152 44.7
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.9e-33 146.4 152 46.7
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 2.4e-33 146.0 154 43.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 4.1e-33 145.2 154 49.4
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 7.1e-33 144.4 153 45.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.2e-32 143.7 155 47.1
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-32 143.3 155 45.2
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.6e-32 143.3 155 45.2
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.1e-32 142.9 153 44.4
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.1e-32 142.9 151 44.4
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 6.0e-32 141.4 154 48.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 6.0e-32 141.4 151 49.0
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.0e-31 140.6 131 53.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.7e-31 139.8 153 43.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.3e-31 139.4 154 43.5
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.3e-31 139.4 154 43.5
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.3e-31 139.4 154 43.5
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 6.6e-31 137.9 153 45.1
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 6.6e-31 137.9 141 46.8
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 8.6e-31 137.5 152 44.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 8.6e-31 137.5 151 44.4
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.5e-30 136.0 152 43.4
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 3.3e-30 135.6 153 45.1
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 3.3e-30 135.6 153 45.8
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.3e-30 135.6 103 58.3
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 4.3e-30 135.2 154 47.4
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 4.3e-30 135.2 151 44.4
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 7.3e-30 134.4 152 45.4
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 9.6e-30 134.0 151 43.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-29 132.1 156 46.8
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.6e-29 132.1 155 47.1
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.6e-29 132.1 123 53.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.8e-28 129.8 156 47.4
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.8e-28 129.8 156 47.4
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.8e-28 129.8 151 43.7
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 5.2e-28 128.3 110 57.3
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 6.8e-28 127.9 151 42.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.5e-27 126.7 125 50.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.6e-27 125.9 160 43.8
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.4e-27 125.6 98 64.3
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 7.6e-27 124.4 138 44.2
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 7.6e-27 124.4 154 39.0
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.2e-26 122.9 151 44.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.2e-26 122.9 149 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 6.4e-26 121.3 151 37.7
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 9.3e-25 117.5 154 43.5
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 4.6e-24 115.2 148 41.9
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.3e-23 112.8 77 67.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.9e-22 109.8 138 41.3
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.3e-21 107.1 150 37.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.8e-20 103.2 85 60.0
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.4e-20 102.8 100 44.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.2e-19 100.5 169 36.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 2.6e-19 99.4 152 38.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.9e-19 97.4 92 46.7
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-17 94.0 91 48.4
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 7.9e-16 87.8 78 55.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-15 87.4 130 35.4
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.7e-15 86.7 74 50.0
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.9e-14 83.2 76 61.8
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.3e-14 82.4 96 44.8
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.3e-14 82.4 104 44.2
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.6e-13 80.1 76 46.1
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.5e-11 73.6 58 56.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.6e-11 72.8 101 36.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 3.4e-11 72.4 99 37.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-09 67.4 99 36.4
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-09 67.0 94 35.1
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-07 59.3 59 42.4
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.1e-06 57.4 48 50.0
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.1e-06 57.4 55 43.6


User provided reference genes

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