Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g074850.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.0e-56 222.2 115 100.0
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 1.6e-18 96.3 127 49.6
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 2.2e-18 95.9 126 51.6
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 2.4e-17 92.4 130 46.2
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 3.1e-17 92.0 123 45.5
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 3.1e-17 92.0 127 48.8
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 2.0e-16 89.4 127 46.5
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 2.6e-16 89.0 127 48.0
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 3.4e-16 88.6 130 42.3
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 4.5e-16 88.2 129 45.0
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 4.5e-16 88.2 121 47.9
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 5.9e-16 87.8 121 47.9
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 5.9e-16 87.8 135 45.2
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 5.9e-16 87.8 129 45.0
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 5.9e-16 87.8 129 47.3
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 5.9e-16 87.8 129 47.3
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 7.7e-16 87.4 127 47.2
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.0e-15 87.0 129 42.6
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 1.0e-15 87.0 127 46.5
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.0e-15 87.0 129 48.1
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 1.3e-15 86.7 131 47.3
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.7e-15 86.3 127 45.7
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 2.2e-15 85.9 131 45.0
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.2e-15 85.9 131 45.0
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 3.8e-15 85.1 127 45.7
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 3.8e-15 85.1 127 44.9
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 3.8e-15 85.1 127 45.7
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 3.8e-15 85.1 127 44.9
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 3.8e-15 85.1 127 45.7
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 3.8e-15 85.1 127 44.9
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 3.8e-15 85.1 129 45.7
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 5.0e-15 84.7 133 43.6
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 5.0e-15 84.7 127 44.9
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 5.0e-15 84.7 133 43.6
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 5.0e-15 84.7 131 42.7
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 6.5e-15 84.3 132 43.9
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 6.5e-15 84.3 127 44.9
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 6.5e-15 84.3 137 42.3
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 8.5e-15 84.0 127 44.1
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 8.5e-15 84.0 132 43.2
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 8.5e-15 84.0 127 44.1
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 1.4e-14 83.2 128 43.0
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.4e-14 83.2 133 47.4
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 1.4e-14 83.2 125 44.0
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.4e-14 83.2 135 42.2
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 1.9e-14 82.8 131 41.2
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.9e-14 82.8 129 45.7
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 2.5e-14 82.4 130 40.8
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 2.5e-14 82.4 130 43.1
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 2.5e-14 82.4 131 44.3
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 3.2e-14 82.0 131 43.5
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 3.2e-14 82.0 131 43.5
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 3.2e-14 82.0 130 42.3
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 4.2e-14 81.6 131 43.5
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 4.2e-14 81.6 131 40.5
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 7.2e-14 80.9 130 43.8
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 9.4e-14 80.5 130 42.3
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 9.4e-14 80.5 132 43.9
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 9.4e-14 80.5 129 45.7
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.2e-13 80.1 130 43.8
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 1.2e-13 80.1 130 43.8
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 1.6e-13 79.7 129 44.2
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.6e-13 79.7 131 39.7
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 2.1e-13 79.3 127 44.9
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 2.1e-13 79.3 127 44.9
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.1e-13 79.3 132 42.4
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 2.1e-13 79.3 130 41.5
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.7e-13 79.0 133 42.1
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 2.7e-13 79.0 134 44.8
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 2.7e-13 79.0 127 43.3
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 3.6e-13 78.6 127 44.9
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 4.6e-13 78.2 132 41.7
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 4.6e-13 78.2 126 43.7
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 4.6e-13 78.2 132 44.7
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 4.6e-13 78.2 132 40.9
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 6.1e-13 77.8 132 40.2
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 6.1e-13 77.8 131 40.5
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 6.1e-13 77.8 130 43.1
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 6.1e-13 77.8 131 40.5
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 6.1e-13 77.8 131 42.0
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 7.9e-13 77.4 129 40.3
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 7.9e-13 77.4 135 40.7
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 7.9e-13 77.4 127 41.7
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.0e-12 77.0 131 41.2
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 1.0e-12 77.0 134 40.3
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 1.4e-12 76.6 127 42.5
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 1.8e-12 76.3 129 42.6
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 1.8e-12 76.3 100 52.0
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 1.8e-12 76.3 137 38.0
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 1.8e-12 76.3 133 40.6
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 2.3e-12 75.9 136 38.2
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 3.0e-12 75.5 133 40.6
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 3.9e-12 75.1 132 39.4
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 3.9e-12 75.1 131 38.9
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 5.1e-12 74.7 128 41.4
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 6.7e-12 74.3 132 41.7
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 6.7e-12 74.3 129 42.6
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 6.7e-12 74.3 129 43.4
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 8.8e-12 73.9 133 38.3
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.1e-11 73.6 131 41.2
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 1.5e-11 73.2 127 40.9
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 2.0e-11 72.8 132 41.7
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 2.5e-11 72.4 132 40.9
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 2.5e-11 72.4 129 41.9
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.5e-11 72.4 131 40.5
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.5e-11 72.4 131 40.5
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 3.3e-11 72.0 134 38.8
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.3e-11 71.6 128 43.0
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 4.3e-11 71.6 129 36.4
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 4.3e-11 71.6 134 37.3
Sopen08g023440 Solanum pennellii HOM05D003027 ORTHO05D011280 4.3e-11 71.6 56 67.9
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 5.7e-11 71.2 118 43.2
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 9.7e-11 70.5 128 40.6
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 9.7e-11 70.5 132 38.6
BolC9t55746H Brassica oleracea HOM05D003027 ORTHO05D003455 1.3e-10 70.1 121 43.0
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.7e-10 69.7 132 37.9
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 1.7e-10 69.7 129 36.4
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 2.2e-10 69.3 129 39.5
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 2.2e-10 69.3 120 43.3
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 4.8e-10 68.2 132 39.4
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 8.2e-10 67.4 142 38.0
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 8.2e-10 67.4 142 37.3
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 1.4e-09 66.6 130 38.5
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 1.4e-09 66.6 133 39.1
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 1.4e-09 66.6 128 35.9
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 1.4e-09 66.6 130 40.0
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 2.4e-09 65.9 60 58.3
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 4.1e-09 65.1 124 40.3
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 5.3e-09 64.7 122 39.3
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 6.9e-09 64.3 123 36.6
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 6.9e-09 64.3 128 37.5
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 6.9e-09 64.3 136 38.2
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 6.9e-09 64.3 118 43.2
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 9.1e-09 63.9 103 42.7
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 1.5e-08 63.2 127 38.6
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 1.5e-08 63.2 126 38.1
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 3.4e-08 62.0 140 40.0
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 4.5e-08 61.6 140 40.0
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 5.9e-08 61.2 135 37.8
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 5.9e-08 61.2 130 40.0
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 7.7e-08 60.8 127 34.6
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 1.7e-07 59.7 144 39.6
Solyc03g013450.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.2e-07 59.3 122 39.3
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 2.9e-07 58.9 108 35.2
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 6.5e-07 57.8 126 33.3
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 6.5e-07 57.8 121 37.2
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 6.5e-07 57.8 121 37.2
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 8.5e-07 57.4 102 44.1
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 8.5e-07 57.4 124 39.5
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-06 57.0 121 36.4
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.4e-06 56.6 137 35.8
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 1.4e-06 56.6 118 34.7
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 1.4e-06 56.6 118 34.7
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 2.5e-06 55.8 135 35.6
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.5e-06 55.8 138 34.1
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 3.2e-06 55.5 124 36.3
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 4.2e-06 55.1 131 35.1
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 5.5e-06 54.7 137 35.8
PGSC0003DMG400044241 Solanum tuberosum HOM05D003027 ORTHO05D003455 7.2e-06 54.3 55 56.4
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 9.4e-06 53.9 128 37.5
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 9.4e-06 53.9 129 38.0


User provided reference genes

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