Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 4.9e-304 1047.0 518 100.0
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 4.9e-304 1047.0 518 100.0
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 3.5e-302 1040.8 518 99.0
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 4.0e-290 1000.7 518 94.4
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.1e-283 978.4 554 88.3
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 6.9e-274 946.8 502 90.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.2e-273 946.0 518 88.6
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 4.5e-273 944.1 517 88.6
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 7.6e-273 943.3 519 87.3
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 8.4e-272 939.9 520 87.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 8.4e-272 939.9 520 87.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.9e-271 938.7 501 89.8
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.2e-270 936.0 519 87.5
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.1e-270 935.3 519 87.3
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.1e-270 935.3 532 84.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 6.0e-270 933.7 520 86.7
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.8e-269 932.2 517 86.3
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 2.3e-269 931.8 523 86.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 5.1e-269 930.6 521 87.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.7e-269 930.2 521 86.8
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 6.7e-269 930.2 517 87.0
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 8.7e-269 929.9 530 84.7
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.9e-268 928.7 526 85.9
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.5e-268 928.3 525 85.9
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.5e-268 928.3 516 87.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.3e-268 927.9 525 85.9
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 5.7e-268 927.2 505 88.3
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 7.4e-268 926.8 521 86.8
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 9.6e-268 926.4 530 84.5
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.6e-267 925.6 516 86.6
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.1e-267 925.2 519 86.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.1e-267 925.2 516 87.0
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.7e-267 924.5 521 86.2
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.7e-267 924.5 521 86.4
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.8e-267 924.1 524 85.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 4.8e-267 924.1 524 85.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.3e-267 923.7 521 86.0
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 8.2e-267 923.3 528 85.2
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 8.2e-267 923.3 521 86.0
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-266 922.9 521 86.4
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.4e-266 922.5 514 86.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.8e-266 922.2 516 86.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 5.3e-266 920.6 518 84.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.9e-266 920.2 517 86.1
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 9.0e-266 919.8 517 86.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.6e-265 918.3 540 83.3
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.6e-265 918.3 521 85.6
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 7.6e-265 916.8 525 84.8
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.0e-264 916.4 516 85.5
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.3e-264 916.0 528 83.7
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.7e-264 915.6 506 86.8
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.2e-264 915.2 518 86.3
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.0e-264 914.1 519 85.4
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 6.5e-264 913.7 520 84.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 5.5e-263 910.6 524 83.6
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 7.2e-263 910.2 516 85.5
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 7.2e-263 910.2 504 87.1
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.2e-262 909.4 517 84.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.1e-262 908.7 522 83.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 6.1e-262 907.1 530 83.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 7.9e-262 906.7 501 87.0
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 7.9e-262 906.7 518 84.2
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 7.9e-262 906.7 523 84.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 7.9e-262 906.7 507 85.4
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 2.3e-261 905.2 501 86.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.3e-261 905.2 501 86.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.3e-261 905.2 524 83.4
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.3e-261 905.2 523 84.5
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.0e-261 904.8 520 84.4
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.9e-261 904.4 514 85.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 8.7e-261 903.3 514 85.0
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-260 902.9 513 85.6
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.9e-260 902.1 530 82.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.9e-260 902.1 515 84.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.9e-260 902.1 515 84.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 2.5e-260 901.7 515 84.9
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 2.5e-260 901.7 515 84.9
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.5e-260 901.7 500 86.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 5.7e-260 900.6 529 82.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 7.4e-260 900.2 515 84.7
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 9.7e-260 899.8 522 83.9
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 9.7e-260 899.8 522 82.8
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 9.7e-260 899.8 498 86.3
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.6e-259 899.0 501 85.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.8e-259 898.3 513 84.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 3.7e-259 897.9 501 86.0
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-258 896.0 523 83.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.4e-258 896.0 525 84.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.1e-258 894.8 491 88.0
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.1e-258 894.8 500 85.4
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 4.1e-258 894.4 522 83.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.1e-258 894.4 546 80.0
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.2e-257 892.9 522 81.8
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.5e-257 892.5 529 82.6
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.4e-257 891.3 510 83.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.8e-256 887.9 516 82.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 5.0e-256 887.5 500 85.0
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.1e-255 886.3 522 81.4
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.1e-254 880.6 519 82.3
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.1e-254 880.6 519 82.3
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 6.1e-254 880.6 520 82.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.3e-252 874.8 511 82.0
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.3e-252 874.8 513 80.9
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 8.5e-248 860.1 506 79.6
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 8.5e-248 860.1 528 78.0
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.9e-245 851.3 521 80.4
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.6e-241 838.6 518 78.4
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.7e-240 835.9 528 76.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.5e-233 811.6 564 71.6
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 8.0e-230 800.4 521 73.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.2e-228 796.6 523 73.4
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.8e-226 789.3 499 74.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 8.5e-224 780.4 514 71.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.2e-223 778.1 506 71.5
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.1e-222 775.8 473 81.4
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.4e-221 773.1 514 70.6
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.3e-219 766.5 514 69.6
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.1e-218 761.5 495 71.3
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 5.9e-217 757.7 505 72.5
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.8e-210 736.1 526 72.4
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.0e-208 730.3 516 72.1
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.5e-207 725.7 412 84.2
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.6e-206 723.0 520 71.7
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 8.9e-205 717.2 491 68.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.5e-199 699.9 522 69.7
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.6e-190 669.8 379 86.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.4e-189 666.8 535 61.1
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 6.4e-187 657.9 499 65.5
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.2e-178 628.6 419 76.4
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 6.0e-177 624.8 346 88.7
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.4e-173 612.8 344 86.6
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 7.6e-164 581.3 522 59.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.9e-162 576.6 287 95.8
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.9e-151 540.0 355 75.8
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.9e-151 540.0 491 52.5
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 3.3e-151 539.3 290 87.2
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 5.5e-138 495.4 510 51.0
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 6.1e-137 491.9 275 88.7
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.5e-135 487.3 355 70.7
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 4.7e-129 465.7 502 49.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 8.8e-120 434.9 285 77.2
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.6e-98 362.5 191 88.0
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.4e-79 299.7 409 39.4
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 3.4e-63 246.9 325 45.2
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.2e-62 244.2 362 42.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.0e-47 194.5 120 75.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 8.4e-38 162.5 93 84.9
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.8e-33 147.5 79 89.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.6e-31 139.4 93 68.8
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-24 118.6 68 79.4
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 5.1e-19 100.1 78 66.7
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 8.5e-14 82.8 72 55.6
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 8.0e-12 76.3 125 40.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.3e-09 68.9 48 58.3
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 2.2e-06 58.2 35 68.6


User provided reference genes

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