Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 7.9e-115 417.2 216 100.0
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 7.9e-115 417.2 216 100.0
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 3.9e-114 414.8 216 99.1
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 2.5e-113 412.1 216 97.7
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.2e-112 409.1 216 97.2
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 8.2e-112 407.1 216 96.8
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.1e-111 406.8 214 97.2
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.4e-106 389.8 216 90.7
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.9e-106 388.3 216 91.2
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 3.3e-105 385.2 216 91.7
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 91.2
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 90.7
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 91.2
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 90.7
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.3
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 90.3
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 89.8
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 89.8
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.4
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.8
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 89.4
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 88.0
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 88.4
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 89.4
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 89.4
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.0
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 87.5
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 87.5
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 88.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 87.5
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 87.0
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 87.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.0
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 87.5
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 87.5
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 87.5
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 87.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 87.0
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 87.0
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 87.5
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.0
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 87.5
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.9
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 87.5
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 87.5
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 88.0
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.0
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.6
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 3.8e-101 371.7 221 86.4
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 87.5
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 87.0
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.4
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.1
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.6
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.1e-100 370.2 215 87.4
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 86.6
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 86.6
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 86.6
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.5
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.5
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 86.1
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 85.2
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 87.0
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 86.6
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 85.6
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.1e-99 365.9 220 86.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 85.6
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 85.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 4.7e-99 364.8 215 85.1
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 83.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 6.1e-99 364.4 215 85.6
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 86.6
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 87.0
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 6.1e-99 364.4 217 86.2
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 83.8
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 86.6
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 86.1
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.6
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 86.1
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.7e-98 360.9 215 86.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 6.7e-98 360.9 227 83.7
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 85.2
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 82.4
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 85.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 85.2
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 85.2
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 7.5e-97 357.5 216 84.7
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 7.5e-97 357.5 216 83.8
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 9.7e-97 357.1 216 85.2
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 1.7e-96 356.3 216 83.3
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 3.7e-96 355.1 221 82.8
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 7.0e-95 350.9 216 83.8
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.7e-94 349.0 216 82.4
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.7e-93 346.3 216 85.2
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.5e-92 343.2 216 83.8
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 4.2e-92 341.7 216 79.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 5.5e-92 341.3 199 88.9
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 7.2e-92 340.9 216 82.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 9.4e-92 340.5 216 76.9
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.0e-90 335.5 221 79.6
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 6.8e-90 334.3 216 81.0
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.2e-89 333.6 218 78.9
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.3e-88 330.1 216 79.6
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 3.1e-87 325.5 216 77.8
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 3.1e-87 325.5 216 78.7
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 3.1e-87 325.5 216 78.7
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 75.5
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.5e-86 321.6 216 79.6
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 5.9e-86 321.2 214 77.6
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 5.9e-86 321.2 216 75.5
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 7.7e-86 320.9 215 79.1
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.7e-85 319.7 216 76.4
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.5e-84 316.6 216 72.7
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 1.5e-81 306.6 165 91.5
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.0e-81 306.2 165 92.7
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 4.4e-81 305.1 216 75.9
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 3.7e-80 302.0 165 90.9
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.8e-79 299.7 216 73.6
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.4e-79 299.3 276 61.6
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 2.5e-76 289.3 216 73.6
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.6e-75 286.6 216 72.2
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 3.6e-75 285.4 216 72.2
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 6.1e-75 284.6 216 71.8
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.0e-74 282.3 216 69.4
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.2e-73 280.4 217 68.2
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.7e-72 276.6 203 75.4
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 6.4e-72 274.6 217 68.2
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.3e-69 266.2 180 81.7
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.1e-67 259.6 353 47.0
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.0e-66 257.3 165 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 7.5e-65 251.1 144 80.6
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 2.2e-64 249.6 217 65.4
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 3.3e-60 235.7 218 58.7
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 8.3e-56 221.1 233 53.6
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.2e-50 201.8 273 50.9
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.6e-49 199.5 108 84.3
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.6e-49 199.5 108 84.3
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 9.2e-47 191.0 169 59.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 6.0e-46 188.3 136 77.2
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 7.8e-46 188.0 212 48.6
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.9e-40 169.5 135 69.6
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 2.4e-39 166.4 114 79.8
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 3.9e-37 159.1 85 85.9
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.9e-37 159.1 84 83.3
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.1e-36 157.5 106 73.6
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 5.6e-36 155.2 81 87.7
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.4e-34 150.6 81 86.4
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.7e-32 143.7 101 78.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.7e-32 143.7 101 78.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.7e-32 143.7 101 78.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.7e-32 143.7 101 78.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.7e-32 143.7 101 78.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.5e-28 130.6 71 78.9
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 7.4e-20 101.7 63 88.9
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.7e-19 99.4 74 77.0
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.4e-17 92.8 68 76.5
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 4.1e-10 69.3 39 76.9
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.5e-09 67.4 39 74.4
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 3.4e-09 66.2 48 66.7
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 3.4e-09 66.2 48 66.7
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 3.4e-09 66.2 48 66.7
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.3e-08 64.3 48 64.6


User provided reference genes

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