Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 5.0e-154 547.7 277 100.0
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 2.6e-150 535.4 277 98.2
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 9.4e-145 516.9 281 94.7
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 1.0e-130 470.3 283 87.3
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 4.9e-125 451.4 302 81.5
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 4.7e-104 381.7 265 74.7
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 4.0e-103 378.6 258 79.1
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 4.0e-103 378.6 260 74.2
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 2.6e-102 375.9 288 72.9
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 4.9e-101 371.7 264 72.0
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 8.4e-101 370.9 273 70.7
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 1.4e-100 370.2 289 68.9
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 7.1e-100 367.9 269 73.6
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 9.2e-100 367.5 231 77.5
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 1.6e-99 366.7 222 81.1
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 2.1e-99 366.3 253 77.9
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 3.5e-99 365.5 287 68.3
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 4.6e-99 365.2 227 78.0
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.0e-98 362.5 315 67.3
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 3.9e-98 362.1 236 78.4
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 6.6e-98 361.3 257 71.2
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 8.6e-98 360.9 277 67.1
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 8.6e-98 360.9 231 77.1
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 1.5e-97 360.1 277 67.9
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 3.3e-97 359.0 203 90.1
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 4.3e-97 358.6 270 68.9
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 5.6e-97 358.2 262 71.0
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 5.6e-97 358.2 224 79.9
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 9.6e-97 357.5 262 70.6
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 1.2e-96 357.1 233 78.1
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 1.2e-96 357.1 273 66.7
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 1.6e-96 356.7 284 68.3
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 2.1e-96 356.3 225 79.6
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 2.8e-96 355.9 235 75.7
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 3.6e-96 355.5 262 70.2
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 6.2e-96 354.8 248 74.6
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 8.1e-96 354.4 215 80.9
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 1.1e-95 354.0 248 74.6
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 1.4e-95 353.6 256 71.1
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 1.4e-95 353.6 223 77.6
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 1.8e-95 353.2 297 65.3
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 1.8e-95 353.2 265 67.9
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 3.1e-95 352.4 268 69.8
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 3.1e-95 352.4 243 76.1
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 4.0e-95 352.1 224 75.9
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 6.8e-95 351.3 220 78.2
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 8.9e-95 350.9 257 69.6
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 8.9e-95 350.9 291 65.3
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 1.5e-94 350.1 228 77.6
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 2.0e-94 349.7 212 80.2
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 2.6e-94 349.4 265 70.2
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 4.4e-94 348.6 258 72.1
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 5.8e-94 348.2 226 76.5
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 7.6e-94 347.8 243 72.0
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 1.7e-93 346.7 259 72.6
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.7e-93 346.7 243 72.4
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 1.7e-93 346.7 284 66.9
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 2.2e-93 346.3 232 75.0
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 3.8e-93 345.5 214 80.8
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 6.4e-93 344.7 242 72.3
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 1.4e-92 343.6 239 72.0
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 3.2e-92 342.4 286 65.4
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 5.4e-92 341.7 219 76.7
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 5.4e-92 341.7 231 75.8
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 7.1e-92 341.3 249 72.3
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 7.1e-92 341.3 210 82.4
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 9.3e-92 340.9 217 77.0
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 2.7e-91 339.3 211 80.1
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 2.7e-91 339.3 219 76.3
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 3.5e-91 339.0 211 80.6
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 6.0e-91 338.2 268 66.8
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 6.0e-91 338.2 206 81.1
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 7.8e-91 337.8 264 67.8
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.0e-90 337.4 214 78.0
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 1.0e-90 337.4 276 64.5
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 2.3e-90 336.3 265 67.5
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 3.0e-90 335.9 244 72.1
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 1.9e-89 333.2 263 67.7
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 4.3e-89 332.0 222 74.8
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 7.3e-89 331.3 211 77.7
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 2.4e-87 326.2 207 77.8
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 5.3e-87 325.1 274 65.0
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 4.4e-86 322.0 198 80.3
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 2.4e-84 316.2 228 70.2
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 1.0e-82 310.8 213 71.4
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 2.5e-81 306.2 202 75.7
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 1.6e-80 303.5 221 70.6
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 1.8e-79 300.1 225 68.4
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 9.9e-78 294.3 227 65.2
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 7.1e-76 288.1 217 66.8
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 2.3e-74 283.1 186 78.0
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 5.6e-73 278.5 160 86.2
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 9.6e-73 277.7 274 55.8
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 2.1e-72 276.6 243 62.1
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 3.7e-72 275.8 207 67.6
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 3.7e-72 275.8 216 68.1
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 1.2e-70 270.8 278 55.0
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 1.7e-69 266.9 209 64.1
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 6.5e-69 265.0 204 68.1
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 4.2e-68 262.3 206 62.1
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 1.8e-66 256.9 275 52.7
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 1.1e-65 254.2 288 50.7
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 2.7e-59 233.0 142 87.3
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 7.9e-59 231.5 145 82.8
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.6e-56 223.8 158 72.2
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 1.0e-53 214.5 256 50.4
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 8.5e-53 211.5 211 58.8
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 4.6e-51 205.7 136 77.9
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 1.5e-46 190.7 188 52.7
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 5.9e-46 188.7 189 60.3
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 1.1e-44 184.5 110 86.4
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 1.4e-39 167.5 110 74.5
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 2.4e-39 166.8 184 45.7
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 3.8e-37 159.5 222 42.3
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 6.5e-37 158.7 191 45.0
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 1.2e-33 147.9 130 59.2
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 3.2e-28 129.8 192 41.1
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 5.5e-28 129.0 114 57.9
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 2.2e-21 107.1 77 68.8
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.0e-17 94.0 76 68.4
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 1.2e-09 68.2 106 41.5
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 1.3e-08 64.7 180 30.0
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.7e-08 64.3 90 33.3
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 4.9e-08 62.8 50 62.0
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 8.3e-08 62.0 152 31.6
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 1.4e-07 61.2 162 34.0
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 3.2e-07 60.1 148 33.1
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 3.2e-07 60.1 167 29.3
Glyma.14G142000 Glycine max HOM05D006435 ORTHO05D008262 4.1e-07 59.7 43 67.4
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 9.2e-07 58.5 152 32.2
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 9.2e-07 58.5 155 30.3
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 9.2e-07 58.5 143 32.2
AUR62001774 Chenopodium quinoa HOM05D000659 ORTHO05D000505 1.2e-06 58.2 152 32.2
Duzib068G1094 Durio zibethinus HOM05D000659 ORTHO05D000505 1.2e-06 58.2 152 29.6
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 1.2e-06 58.2 155 31.0
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 1.6e-06 57.8 162 33.3
Solyc03g026080.3 Solanum lycopersicum HOM05D000659 ORTHO05D000505 1.6e-06 57.8 156 30.8
Sopen03g004920 Solanum pennellii HOM05D000659 ORTHO05D000505 1.6e-06 57.8 156 30.8
ECA232G2175 Erigeron canadensis HOM05D000659 ORTHO05D000505 2.0e-06 57.4 158 31.6
PGSC0003DMG400014321 Solanum tuberosum HOM05D000659 ORTHO05D000505 2.0e-06 57.4 156 31.4
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 2.0e-06 57.4 147 32.0
BraA10t44950Z Brassica rapa HOM05D000659 ORTHO05D000505 2.7e-06 57.0 150 34.0
Medtr1g101310 Medicago truncatula HOM05D000659 ORTHO05D000505 2.7e-06 57.0 169 28.4
vmacro20163 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 2.7e-06 57.0 153 34.0
BcaB01g06352 Brassica carinata HOM05D000659 ORTHO05D000505 3.5e-06 56.6 152 33.6
BcaC06g32457 Brassica carinata HOM05D000659 ORTHO05D000505 3.5e-06 56.6 152 33.6
Gohir.D09G150900 Gossypium hirsutum HOM05D000659 ORTHO05D000505 3.5e-06 56.6 142 31.7
Gorai.006G172200 Gossypium raimondii HOM05D000659 ORTHO05D000505 3.5e-06 56.6 142 31.7
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 3.5e-06 56.6 150 31.3
Rhsim04G0157700 Rhododendron simsii HOM05D000659 ORTHO05D000505 3.5e-06 56.6 147 32.0
Hund04948 Selenicereus undatus HOM05D000659 ORTHO05D000505 3.5e-06 56.6 164 30.5
A10p29020 Brassica napus HOM05D000659 ORTHO05D000505 4.6e-06 56.2 150 33.3
CiPaw.12G097400 Carya illinoinensis HOM05D000659 ORTHO05D000505 4.6e-06 56.2 152 30.3
PGR042G1240 Punica granatum HOM05D000659 ORTHO05D000505 4.6e-06 56.2 158 29.7
C09p69380 Brassica napus HOM05D000659 ORTHO05D000505 5.9e-06 55.8 150 33.3
BolC9t59682H Brassica oleracea HOM05D000659 ORTHO05D000505 5.9e-06 55.8 150 33.3
COL.COLO4_05258 Corchorus olitorius HOM05D000659 ORTHO05D000505 5.9e-06 55.8 152 29.6
Thhalv10014021m.g Eutrema salsugineum HOM05D000659 ORTHO05D000505 5.9e-06 55.8 152 34.2
Rhsim05G0193700 Rhododendron simsii HOM05D000659 ORTHO05D000505 5.9e-06 55.8 156 31.4
Aqoxy7G00408 Aquilegia oxysepala HOM05D000659 ORTHO05D000505 7.8e-06 55.5 155 31.0
CAN.G769.7 Capsicum annuum HOM05D000659 ORTHO05D000505 7.8e-06 55.5 156 30.8
FAN06G1231 Fragaria x ananassa HOM05D000659 ORTHO05D000505 7.8e-06 55.5 155 29.0
LjContig00238g0018309 Lotus japonicus HOM05D000659 ORTHO05D000505 7.8e-06 55.5 155 29.7
Sed0002997 Sechium edule HOM05D000659 ORTHO05D000505 7.8e-06 55.5 158 31.0
SEGI_21055 Sequoiadendron giganteum HOM05D000659 ORTHO05D000505 7.8e-06 55.5 146 31.5
Sc19g0000010 Simmondsia chinensis HOM05D000659 ORTHO05D000505 7.8e-06 55.5 163 30.1
unitig_26.g9193 Utricularia gibba HOM05D000659 ORTHO05D000505 7.8e-06 55.5 175 26.9


User provided reference genes

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