Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 4.0e-154 549.7 616 100.0
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.0e-144 518.5 616 97.9
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 7.6e-137 492.3 620 91.1
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 4.5e-89 333.6 620 74.8
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.3e-88 331.3 250 68.8
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.3e-80 304.7 184 79.3
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.3e-64 252.3 205 62.4
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.8e-43 181.0 116 73.3
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.1e-39 169.5 174 47.1
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 7.4e-39 166.8 245 40.4
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 1.8e-37 162.2 243 37.9
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.6e-36 156.8 252 41.3
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.2e-35 155.2 175 43.4
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.4e-34 152.5 173 46.2
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 9.3e-34 149.8 175 41.7
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 4.6e-33 147.5 115 66.1
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 5.1e-32 144.1 177 40.1
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.5e-31 142.5 177 41.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 9.6e-31 139.8 230 38.7
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 1.3e-30 139.4 169 42.6
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.4e-29 136.0 183 37.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.4e-29 135.2 139 46.0
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 5.3e-29 134.0 169 43.8
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 7.6e-28 130.2 140 45.7
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.0e-27 129.8 143 46.9
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.7e-27 129.0 245 31.8
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 2.9e-27 128.3 177 39.0
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 2.5e-26 125.2 165 38.8
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 9.3e-26 123.2 167 36.5
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.6e-25 122.5 144 41.0
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 2.1e-25 122.1 140 40.7
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 4.6e-25 120.9 156 35.9
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 1.3e-24 119.4 137 41.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.8e-24 119.0 182 36.8
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 2.3e-24 118.6 191 36.1
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 5.1e-24 117.5 163 36.2
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 7.4e-23 113.6 140 39.3
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 9.6e-23 113.2 139 41.7
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.3e-22 112.8 140 40.0
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.1e-22 112.1 167 38.3
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 2.1e-22 112.1 139 41.0
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.7e-22 111.3 146 38.4
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.7e-22 111.3 173 35.3
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 6.3e-22 110.5 167 36.5
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 6.3e-22 110.5 131 43.5
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.1e-21 109.8 139 38.8
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.4e-21 109.4 166 36.1
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 3.1e-21 108.2 129 39.5
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.3e-21 107.5 164 36.6
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.4e-20 104.8 166 35.5
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 4.5e-20 104.4 176 30.1
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 5.9e-20 104.0 153 36.6
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 5.9e-20 104.0 143 39.2
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 7.6e-20 103.6 132 36.4
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.0e-19 103.2 166 35.5
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.0e-19 103.2 150 36.7
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.3e-19 102.8 199 31.7
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.2e-19 102.1 125 37.6
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.2e-19 102.1 166 33.7
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.2e-19 102.1 166 33.7
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.2e-19 102.1 131 38.2
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 6.5e-19 100.5 167 34.1
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 6.5e-19 100.5 134 34.3
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 1.4e-18 99.4 169 34.3
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.9e-18 99.0 130 36.2
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 7.2e-18 97.1 165 30.9
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 9.3e-18 96.7 114 41.2
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 9.3e-18 96.7 132 37.1
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.2e-17 96.3 166 34.9
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 2.1e-17 95.5 164 34.8
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 2.1e-17 95.5 133 35.3
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.8e-16 92.4 124 36.3
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.3e-16 92.0 242 29.3
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 3.9e-16 91.3 146 33.6
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.5e-15 88.6 161 31.1
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.5e-15 88.6 183 31.1
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 2.5e-15 88.6 169 31.4
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.3e-15 88.2 162 34.6
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 4.3e-15 87.8 183 31.1
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 4.3e-15 87.8 183 31.1
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 9.7e-15 86.7 136 36.0
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.3e-14 86.3 158 34.8
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 1.3e-14 86.3 173 31.2
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.3e-14 86.3 129 33.3
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.3e-14 86.3 161 31.7
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.8e-14 85.1 145 35.9
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 3.7e-14 84.7 144 32.6
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 3.7e-14 84.7 144 32.6
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 6.3e-14 84.0 124 35.5
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 1.1e-13 83.2 124 35.5
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-13 82.8 149 33.6
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 2.4e-13 82.0 153 30.7
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.4e-13 82.0 138 36.2
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 4.1e-13 81.3 114 36.8
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 4.1e-13 81.3 125 34.4
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 9.0e-13 80.1 169 32.5
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 3.4e-12 78.2 162 27.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.4e-12 78.2 166 28.9
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.2e-11 75.5 170 27.6
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 2.9e-11 75.1 129 30.2
CAN.G1030.27 Capsicum annuum HOM05D006287 ORTHO05D008192 5.0e-11 74.3 39 84.6
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 5.0e-11 74.3 138 29.0
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.1e-09 68.9 117 34.2
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 2.7e-09 68.6 111 33.3
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.5e-07 62.8 107 37.4
HPP92_012737 Vanilla planifolia HOM05D007496 ORTHO05D009479 5.7e-07 60.8 153 28.8
Actinidia16375 Actinidia chinensis HOM05D007455 ORTHO05D009431 1.3e-06 59.7 180 27.2
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 4.8e-06 57.8 132 25.0
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 8.2e-06 57.0 187 25.1
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 8.2e-06 57.0 165 24.2


User provided reference genes

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