Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 7.9e-132 473.8 240 100.0
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 1.1e-125 453.4 240 96.2
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 3.5e-119 431.8 240 92.1
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.0e-102 377.1 244 77.9
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 8.3e-97 357.5 243 77.0
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 8.0e-84 314.3 251 66.9
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.2e-79 300.4 243 63.8
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.0e-78 295.0 244 65.2
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 5.0e-78 295.0 242 62.8
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 3.3e-77 292.4 245 62.0
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.6e-77 291.6 225 70.2
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.8e-76 289.3 243 65.0
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 8.1e-76 287.7 243 61.7
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.1e-75 287.3 242 60.7
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 8.9e-75 284.3 229 61.1
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 2.0e-74 283.1 238 58.8
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 4.4e-74 282.0 242 58.7
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 4.4e-74 282.0 232 61.6
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 4.4e-74 282.0 206 65.5
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 5.8e-74 281.6 231 60.6
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 7.5e-74 281.2 242 59.9
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 1.3e-73 280.4 241 59.8
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 1.3e-73 280.4 241 56.0
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.3e-73 280.4 206 65.0
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 2.9e-73 279.3 227 60.8
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 4.9e-73 278.5 220 61.8
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 8.3e-73 277.7 247 56.7
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.9e-72 276.6 210 64.3
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 1.9e-72 276.6 233 60.9
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.2e-72 275.8 212 63.7
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 4.1e-72 275.4 225 59.6
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 9.2e-72 274.2 245 58.0
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.6e-71 273.5 237 61.6
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.6e-71 273.5 244 58.2
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 2.1e-71 273.1 234 61.1
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.0e-70 270.8 217 61.3
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.0e-70 270.8 215 60.0
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.3e-70 270.4 216 60.2
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 3.0e-70 269.2 221 59.7
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 6.6e-70 268.1 225 60.9
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.9e-69 266.5 234 58.1
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 2.5e-69 266.2 230 59.6
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 5.6e-69 265.0 222 58.1
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 2.8e-68 262.7 236 60.6
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 6.2e-68 261.5 201 63.7
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 8.1e-68 261.2 211 61.6
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 2.3e-67 259.6 205 60.5
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 3.1e-67 259.2 201 63.2
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-67 258.8 228 57.9
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 5.2e-67 258.5 201 63.2
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 8.9e-67 257.7 250 54.8
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 3.4e-66 255.8 211 61.1
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 5.8e-66 255.0 204 62.3
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 9.9e-66 254.2 221 57.5
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 9.9e-66 254.2 212 57.5
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 1.3e-65 253.8 238 55.9
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 1.7e-65 253.4 218 57.3
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 1.7e-65 253.4 204 56.9
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.9e-65 252.7 217 58.5
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 1.1e-64 250.8 222 56.3
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.1e-64 250.8 238 50.8
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 1.4e-64 250.4 204 61.3
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.9e-64 250.0 222 55.4
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 3.2e-64 249.2 220 54.1
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 3.2e-64 249.2 239 51.9
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 7.1e-64 248.1 214 57.0
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.2e-63 247.3 206 56.8
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.2e-60 237.3 204 58.8
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.2e-60 237.3 204 57.8
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 1.8e-59 233.4 206 55.3
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 2.4e-59 233.0 242 50.0
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 2.0e-58 229.9 221 53.8
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 9.9e-58 227.6 248 48.0
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 8.4e-57 224.6 219 52.5
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 1.9e-56 223.4 241 50.2
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 3.6e-52 209.1 205 48.8
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 6.2e-52 208.4 152 75.0
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 8.1e-52 208.0 205 48.3
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.8e-51 206.8 157 72.0
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.1e-51 206.1 203 49.3
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 3.1e-51 206.1 205 48.8
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 6.9e-51 204.9 192 53.6
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.5e-50 203.8 213 46.5
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 3.4e-50 202.6 267 43.4
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 4.5e-50 202.2 205 48.3
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.8e-49 199.1 202 50.0
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 3.8e-49 199.1 220 46.4
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 6.4e-49 198.4 221 46.6
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 6.4e-49 198.4 264 44.7
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 6.4e-49 198.4 264 45.8
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 8.4e-49 198.0 191 50.8
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 2.4e-48 196.4 263 44.9
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.6e-47 193.7 268 44.8
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 2.1e-47 193.4 231 46.3
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 2.1e-47 193.4 231 46.3
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 2.1e-47 193.4 229 44.1
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.1e-47 193.4 144 75.7
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 4.6e-47 192.2 269 42.8
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 4.6e-47 192.2 231 45.9
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 7.9e-47 191.4 231 45.5
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 7.9e-47 191.4 231 45.5
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 1.0e-46 191.0 269 43.1
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 1.3e-46 190.7 279 41.6
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 9.6e-45 184.5 202 48.0
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 3.1e-43 179.5 218 44.5
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 2.9e-41 172.9 204 45.1
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.7e-39 166.4 200 45.0
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 6.7e-38 161.8 199 44.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 6.7e-38 161.8 201 46.3
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 9.6e-37 157.9 131 61.1
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 6.2e-36 155.2 106 67.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-35 153.3 201 40.3
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-35 152.5 185 46.5
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-33 147.9 201 39.3
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 1.4e-27 127.5 159 44.0
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 3.8e-25 119.4 216 35.2
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 5.0e-25 119.0 233 34.8
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.1e-24 117.9 210 36.2
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.9e-24 117.1 227 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 3.6e-23 112.8 235 33.6
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 3.9e-22 109.4 259 32.8
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 6.9e-19 98.6 98 45.9
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.6e-18 96.7 210 33.3
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 5.9e-18 95.5 215 33.5
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 2.7e-15 86.7 100 47.0
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 6.3e-12 75.5 59 50.8
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 2.6e-10 70.1 54 53.7
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 7.7e-10 68.6 223 25.6
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 2.9e-09 66.6 167 32.3
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.1e-08 64.7 116 34.5
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 1.4e-08 64.3 116 30.2


User provided reference genes

Program Settings