Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 3.2e-281 971.1 481 100.0
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 1.1e-278 962.6 482 99.2
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 8.9e-276 953.0 482 98.3
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 5.2e-268 927.2 482 95.0
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.4e-265 919.1 482 94.2
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 4.2e-265 917.5 482 94.0
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 5.6e-262 907.1 484 93.2
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 6.5e-234 813.9 483 82.8
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 9.4e-233 810.1 483 81.4
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 1.2e-232 809.7 483 82.4
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 1.2e-232 809.7 483 81.8
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 2.1e-232 808.9 483 82.6
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 1.4e-231 806.2 483 82.4
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 3.9e-231 804.7 485 81.2
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 3.9e-231 804.7 487 81.7
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 8.8e-231 803.5 484 81.4
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.5e-230 802.0 483 81.4
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 7.4e-230 800.4 483 81.0
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 2.2e-229 798.9 485 81.0
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 4.8e-229 797.7 484 80.8
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 6.3e-229 797.3 484 81.0
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 6.3e-229 797.3 482 81.3
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.1e-228 796.6 488 80.5
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.8e-228 795.8 485 81.4
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 4.1e-228 794.7 483 81.4
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 3.4e-227 791.6 483 81.6
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.4e-227 791.6 482 80.3
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.3e-226 789.6 494 78.9
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.3e-226 789.6 494 78.9
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.7e-226 789.3 482 79.5
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 2.2e-226 788.9 483 80.1
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 8.5e-226 786.9 494 78.3
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.9e-225 785.8 482 79.5
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 2.5e-225 785.4 483 79.3
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 3.2e-225 785.0 484 78.1
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 3.2e-225 785.0 482 79.5
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 5.5e-225 784.3 483 78.5
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.2e-224 783.1 483 79.7
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.6e-224 782.7 431 87.7
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.6e-224 782.7 489 79.1
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 2.7e-224 781.9 490 79.2
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 4.7e-224 781.2 481 79.8
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.7e-224 781.2 489 79.3
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.0e-223 780.0 482 78.6
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.0e-223 780.0 478 79.7
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 1.4e-223 779.6 484 80.2
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.8e-223 779.2 484 79.5
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 1.8e-223 779.2 483 79.5
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 2.3e-223 778.9 490 79.0
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 3.9e-223 778.1 484 79.3
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.1e-222 776.5 483 79.5
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-222 776.5 483 79.7
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.5e-222 776.2 484 79.8
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.6e-222 775.4 483 79.3
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.3e-222 775.0 483 79.7
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 3.3e-222 775.0 482 79.0
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 4.4e-222 774.6 482 78.4
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 5.7e-222 774.2 421 87.9
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 5.7e-222 774.2 483 79.3
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 5.7e-222 774.2 483 78.3
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 7.4e-222 773.9 483 77.8
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 7.4e-222 773.9 483 79.3
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 9.7e-222 773.5 481 79.0
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 3.7e-221 771.5 484 80.8
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 3.7e-221 771.5 514 75.3
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 4.8e-221 771.2 484 78.9
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 6.3e-221 770.8 483 79.5
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 6.3e-221 770.8 483 78.9
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 6.3e-221 770.8 484 78.7
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 8.2e-221 770.4 483 79.9
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 3.1e-220 768.5 484 78.3
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 5.3e-220 767.7 482 79.3
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 9.1e-220 766.9 482 78.4
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.2e-219 766.5 484 78.3
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 1.5e-219 766.1 481 77.8
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 2.0e-219 765.8 484 77.7
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 3.5e-219 765.0 484 77.7
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.7e-218 762.7 485 77.9
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 1.9e-217 759.2 482 78.2
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 3.2e-217 758.4 481 78.0
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 4.2e-217 758.1 490 78.6
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 5.5e-217 757.7 484 78.9
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 3.6e-216 755.0 487 78.2
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 6.1e-216 754.2 487 78.0
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.4e-215 753.1 484 78.1
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 2.0e-214 749.2 486 78.4
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 1.7e-213 746.1 482 75.7
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.8e-212 742.7 491 77.4
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.8e-212 742.7 491 77.4
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.3e-210 736.5 391 89.0
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 2.2e-210 735.7 394 88.3
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 2.9e-210 735.3 394 88.3
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 1.9e-209 732.6 484 75.4
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 1.6e-208 729.6 482 76.3
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 2.1e-208 729.2 483 76.2
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.7e-208 728.8 485 76.1
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 5.2e-207 724.5 481 75.7
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 3.1e-204 715.3 486 73.9
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 3.5e-203 711.8 441 78.9
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 2.3e-199 699.1 430 76.3
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 4.5e-195 684.9 438 74.0
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 7.7e-195 684.1 442 76.2
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 8.6e-194 680.6 449 73.9
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 3.3e-193 678.7 389 80.2
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 4.2e-193 678.3 429 74.6
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.7e-189 666.4 482 71.6
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 1.1e-177 627.1 401 73.3
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 4.7e-176 621.7 481 67.4
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-175 620.5 429 72.5
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.7e-173 613.2 383 77.5
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.7e-170 603.2 389 70.4
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 6.2e-168 594.7 402 67.2
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 2.4e-156 556.2 289 92.0
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 1.7e-154 550.1 289 90.3
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 4.6e-139 498.8 340 71.5
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 3.9e-138 495.7 360 67.5
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.7e-105 385.6 237 78.5
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.6e-99 366.3 270 66.7
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.3e-82 310.5 172 83.7
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.5e-62 243.4 196 62.8
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.5e-60 238.0 139 82.0
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.3e-60 235.7 135 84.4
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 1.2e-57 228.4 130 80.8
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 8.4e-48 195.7 140 71.4
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 4.4e-41 173.3 158 58.2
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 2.3e-37 161.0 94 84.0
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 4.6e-30 136.7 105 62.9
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 2.7e-14 84.3 59 67.8
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 9.6e-12 75.9 330 26.7
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 5.0e-08 63.5 142 28.2
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 6.5e-08 63.2 158 29.1
Pp3c20_3400 Physcomitrium patens HOM05D000776 ORTHO05D001624 6.5e-08 63.2 187 27.8
BraA01t02620Z Brassica rapa HOM05D000776 ORTHO05D001624 8.4e-08 62.8 163 25.2
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.4e-07 62.0 127 29.9
TPR.G12967 Trifolium pratense HOM05D000776 ORTHO05D001624 3.2e-07 60.8 168 27.4
Lalb_Chr05g0224991 Lupinus albus HOM05D000776 ORTHO05D001624 7.2e-07 59.7 160 26.2
Atru.chr9.1565 Acer truncatum HOM05D000776 ORTHO05D001624 9.3e-07 59.3 160 27.5
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 1.6e-06 58.5 173 26.6
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 2.1e-06 58.2 154 26.0
Lj2C194T17 Lonicera japonica HOM05D000776 ORTHO05D001624 2.1e-06 58.2 158 25.9
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 2.1e-06 58.2 173 26.0
EL10Ac5g12750 Beta vulgaris HOM05D000776 ORTHO05D001624 2.7e-06 57.8 166 26.5
CSS0022914 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D001624 2.7e-06 57.8 179 27.4
SEGI_05924 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 2.7e-06 57.8 131 28.2
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 4.6e-06 57.0 160 25.6
Ah.12g057480 Amaranthus hybridus HOM05D000776 ORTHO05D001624 6.1e-06 56.6 164 26.2
Psat1g087240 Pisum sativum HOM05D000776 ORTHO05D001624 6.1e-06 56.6 159 25.8
TPR.G5954 Trifolium pratense HOM05D000776 ORTHO05D001624 6.1e-06 56.6 153 26.1
Zm00001eb319250 Zea mays HOM05D000776 ORTHO05D001624 7.9e-06 56.2 167 28.1


User provided reference genes

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