Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.7e-249 865.5 441 100.0
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 1.5e-248 862.4 441 99.3
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 5.4e-243 844.0 441 97.3
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.2e-194 683.3 420 80.2
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 7.1e-187 657.5 446 73.8
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 4.8e-183 644.8 435 73.3
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 6.2e-183 644.4 450 71.1
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 2.0e-181 639.4 452 69.0
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.5e-181 638.3 446 67.9
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 5.8e-181 637.9 453 70.0
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.3e-180 636.7 448 71.7
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 1.7e-180 636.3 437 71.2
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 6.4e-180 634.4 448 69.2
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 1.1e-179 633.6 452 70.4
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 7.1e-179 630.9 439 68.1
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.6e-178 629.8 463 66.5
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 2.1e-178 629.4 464 67.5
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.8e-177 626.3 448 67.6
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.6e-175 619.8 439 67.4
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 4.8e-175 618.2 443 70.9
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 4.8e-175 618.2 439 67.2
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.1e-174 617.1 439 67.4
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.4e-174 615.9 450 66.4
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.5e-173 613.2 455 66.6
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.6e-173 612.5 450 65.1
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 2.9e-172 609.0 439 66.5
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 2.5e-171 605.9 479 62.8
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.8e-169 599.7 437 66.1
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 2.3e-169 599.4 448 68.5
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 3.9e-169 598.6 453 65.6
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 2.5e-168 595.9 452 67.7
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.6e-167 593.2 453 64.5
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.2e-167 592.8 457 64.6
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 2.2e-167 592.8 437 65.9
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 8.2e-167 590.9 451 67.0
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 6.9e-166 587.8 451 67.2
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.2e-165 587.0 471 61.8
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 4.5e-165 585.1 449 66.6
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 7.7e-165 584.3 449 67.0
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 7.7e-165 584.3 443 63.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.0e-164 583.9 449 67.0
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 5.0e-164 581.6 452 62.2
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 1.4e-163 580.1 453 62.3
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.2e-162 577.0 440 64.3
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 7.9e-162 574.3 450 65.6
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.3e-161 572.8 450 62.2
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 2.5e-160 569.3 466 61.2
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.5e-160 569.3 455 62.4
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 4.8e-159 565.1 497 57.9
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.8e-158 563.1 456 59.0
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 2.4e-158 562.8 491 58.5
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.4e-158 562.8 452 62.2
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 5.3e-158 561.6 430 66.7
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 1.0e-156 557.4 443 60.7
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 5.0e-156 555.1 453 60.7
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.1e-155 553.9 445 59.6
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 1.4e-155 553.5 450 59.8
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.4e-155 553.5 450 59.6
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 4.2e-155 552.0 450 59.3
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 4.2e-155 552.0 450 59.3
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.6e-154 550.1 440 61.8
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 4.7e-154 548.5 444 60.1
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.9e-153 545.4 441 57.6
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.4e-152 542.0 441 57.1
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.8e-151 538.5 547 52.8
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 3.1e-150 535.8 488 57.0
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 3.5e-149 532.3 437 60.6
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 1.0e-148 530.8 463 57.0
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.9e-147 526.6 526 51.9
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.2e-147 525.8 327 86.9
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 2.3e-145 519.6 525 53.5
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.3e-143 513.8 428 60.5
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.7e-143 513.5 464 58.0
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.2e-141 507.3 414 60.1
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 2.5e-139 499.6 422 58.8
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 3.2e-139 499.2 468 54.7
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.7e-138 496.1 400 64.5
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 2.2e-135 486.5 484 53.7
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 7.0e-134 481.5 444 53.8
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 1.4e-129 467.2 399 57.9
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.5e-128 463.8 333 65.8
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 5.0e-124 448.7 455 52.1
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.2e-117 427.6 478 45.4
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.5e-117 425.6 291 73.5
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 1.6e-114 417.2 353 61.2
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.5e-112 410.6 402 53.7
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 2.4e-110 403.3 422 51.9
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.6e-109 400.6 201 98.0
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.3e-105 386.7 260 75.4
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 8.9e-105 384.8 459 42.3
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.5e-104 384.0 453 42.4
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.0e-104 383.6 453 42.4
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 4.4e-104 382.5 389 53.5
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 4.1e-94 349.4 428 48.6
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.8e-93 345.1 210 74.8
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 6.6e-92 342.0 215 73.5
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 3.8e-87 326.2 302 55.0
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.0e-84 318.2 201 73.6
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 3.3e-83 313.2 201 70.6
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 5.3e-81 305.8 170 80.6
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.4e-80 303.1 200 67.5
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.3e-74 284.6 166 75.3
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.0e-72 277.3 223 61.4
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.0e-72 277.3 230 52.6
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.4e-70 271.2 231 59.7
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 4.2e-70 269.6 261 55.2
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 2.1e-69 267.3 162 77.2
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.1e-62 245.0 236 53.4
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 5.5e-62 242.7 242 53.3
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.3e-60 238.0 137 78.1
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.5e-59 234.6 234 48.7
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 1.6e-58 231.1 201 56.7
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.0e-55 219.5 206 52.9
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.3e-52 211.5 172 59.3
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 2.3e-52 210.7 194 53.6
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 6.9e-49 199.1 184 55.4
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 6.5e-47 192.6 337 35.0
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.4e-41 174.1 86 91.9
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 7.2e-38 162.5 261 39.8
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 7.2e-38 162.5 97 78.4
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.4e-35 152.5 85 88.2
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.0e-31 142.1 275 30.9
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 9.4e-30 135.6 70 90.0
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-22 112.1 249 33.3
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 5.5e-22 109.8 267 31.1
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.9e-14 84.7 55 65.5
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 7.2e-14 82.8 52 69.2
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.0e-12 79.0 57 66.7
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 9.2e-09 65.9 251 30.7


User provided reference genes

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