Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 0.0e+00 1165.2 593 100.0
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1109.4 562 99.3
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 2.0e-309 1065.1 562 94.3
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.2e-300 1035.0 569 91.6
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 6.0e-298 1026.9 562 92.0
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.7e-268 929.1 528 88.8
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 3.2e-251 871.7 569 77.2
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 5.2e-249 864.4 569 75.7
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 2.0e-248 862.4 569 75.2
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 2.8e-247 858.6 569 75.9
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 1.1e-246 856.7 569 75.4
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 5.3e-246 854.4 570 75.3
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 5.0e-244 847.8 569 74.5
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 2.6e-240 835.5 569 73.8
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.1e-238 830.1 570 75.8
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 7.7e-237 823.9 569 72.6
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 3.2e-235 818.5 569 74.2
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 2.7e-234 815.5 569 71.4
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 3.6e-234 815.1 564 73.9
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 2.3e-233 812.4 563 73.2
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 3.0e-233 812.0 569 72.4
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 3.0e-233 812.0 569 72.9
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 5.2e-233 811.2 563 71.8
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.7e-232 807.7 569 71.5
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 6.3e-231 804.3 569 71.2
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.1e-230 803.5 570 72.6
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 1.4e-230 803.1 569 71.2
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 1.8e-230 802.7 569 71.4
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 2.4e-230 802.4 569 70.7
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 4.1e-230 801.6 569 70.7
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 9.1e-230 800.4 564 72.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 1.6e-229 799.7 569 71.5
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.0e-229 799.3 569 71.0
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 2.7e-229 798.9 569 71.7
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 5.9e-229 797.7 591 70.6
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 1.7e-228 796.2 571 70.8
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 2.3e-228 795.8 569 71.2
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 5.0e-228 794.7 569 70.1
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 6.5e-228 794.3 569 72.6
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.1e-227 793.5 571 70.4
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.9e-227 792.7 565 70.6
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.6e-226 789.6 571 70.4
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.1e-226 789.3 571 70.4
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.6e-226 788.5 569 71.0
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 1.0e-225 786.9 569 71.2
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.4e-225 786.6 569 71.0
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.8e-225 786.2 571 69.9
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.3e-225 785.8 565 72.2
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 6.8e-225 784.3 567 69.8
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.0e-224 782.7 567 70.0
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 2.6e-224 782.3 571 70.2
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 9.8e-224 780.4 570 70.0
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 2.8e-223 778.9 570 70.2
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 2.8e-223 778.9 572 70.3
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 3.7e-223 778.5 568 68.8
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 6.3e-223 777.7 567 69.3
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.1e-222 776.9 569 70.5
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.4e-222 775.8 569 69.1
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.1e-222 775.0 567 70.2
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 1.2e-221 773.5 570 70.0
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 1.0e-220 770.4 569 68.4
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 5.0e-220 768.1 615 65.7
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 6.6e-220 767.7 569 68.7
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.1e-219 766.9 571 68.1
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 4.3e-219 765.0 571 69.5
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 7.3e-219 764.2 570 69.3
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 2.8e-218 762.3 571 68.8
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 8.0e-218 760.8 568 70.2
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 8.0e-218 760.8 569 68.2
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 1.0e-217 760.4 569 67.7
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.8e-217 759.6 569 67.8
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 2.3e-217 759.2 570 69.3
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 2.2e-215 752.7 569 67.8
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 3.7e-215 751.9 574 67.4
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 3.7e-215 751.9 569 67.1
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.8e-214 749.6 508 74.4
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 3.2e-214 748.8 567 67.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 4.1e-214 748.4 567 67.7
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 3.5e-213 745.3 566 67.0
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 3.5e-213 745.3 569 66.8
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.3e-212 743.4 566 67.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.7e-212 743.0 561 66.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.7e-212 743.0 561 67.0
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 5.0e-212 741.5 570 66.8
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.5e-211 740.0 570 67.9
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.9e-211 739.6 561 66.7
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 9.5e-211 737.3 569 66.1
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 1.1e-209 733.8 569 65.7
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 4.0e-209 731.9 566 66.3
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 1.7e-207 726.5 566 65.4
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 2.9e-207 725.7 566 65.9
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.1e-206 723.8 576 66.1
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 1.9e-203 713.0 568 65.5
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.3e-203 711.1 570 62.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.3e-203 711.1 570 62.8
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.4e-201 706.8 661 58.5
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.8e-200 701.4 569 64.9
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 3.5e-197 692.2 570 63.9
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.0e-196 690.6 569 63.1
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.6e-189 666.8 563 63.2
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.8e-183 645.6 570 60.5
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 4.5e-168 595.5 568 53.9
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 4.2e-166 589.0 570 56.1
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 1.6e-165 587.0 573 55.7
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.3e-159 567.4 463 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.1e-158 564.3 571 53.1
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 1.2e-157 560.8 391 73.7
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.0e-152 543.5 595 50.4
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.4e-150 537.3 593 50.1
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.7e-147 525.4 559 50.4
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.7e-147 525.4 541 50.8
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 9.7e-147 524.6 606 49.2
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.7e-146 523.9 602 49.0
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.4e-145 520.0 393 66.9
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.2e-144 517.7 566 49.1
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.0e-124 449.5 376 64.1
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 4.4e-123 446.0 379 63.9
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 6.5e-119 432.2 460 52.6
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 2.0e-91 340.9 359 51.0
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.9e-89 334.3 284 63.0
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 7.0e-89 332.4 604 36.8
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 9.2e-81 305.4 283 58.3
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.1e-61 241.1 151 75.5
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 2.0e-51 208.0 131 76.3
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 7.1e-41 172.9 110 73.6
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 4.8e-37 160.2 186 48.9
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 1.8e-36 158.3 189 50.3
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 2.3e-31 141.4 134 56.0
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 1.0e-26 125.9 108 63.0
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 2.2e-26 124.8 99 62.6
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 1.1e-20 105.9 99 56.6
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 1.2e-19 102.4 84 59.5
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.5e-17 95.5 47 89.4
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 4.7e-16 90.5 88 55.7
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 1.8e-15 88.6 57 75.4
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 2.3e-15 88.2 64 67.2
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 8.8e-15 86.3 176 35.8
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 7.0e-12 76.6 55 61.8
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 1.6e-11 75.5 63 58.7
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 3.8e-10 70.9 71 46.5
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 5.0e-10 70.5 58 58.6
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.5e-09 68.2 71 50.7
AagrBONN_evm.TU.Sc2ySwM_340.609 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.5e-06 58.9 80 45.0


User provided reference genes

Program Settings