Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 2374.4 1111 100.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 2356.6 1111 99.3
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 2206.4 1111 92.2
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 2075.8 1105 87.4
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1835.1 1110 74.4
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1793.5 1114 73.2
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1767.7 1110 72.0
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1750.7 1111 69.8
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1733.8 1128 70.2
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1719.1 1110 69.7
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1717.6 1036 79.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1715.7 1109 69.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1710.3 1073 72.4
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1110 69.1
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1109 68.4
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1698.7 1112 68.6
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1698.3 1109 68.2
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1698.3 1109 68.9
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1692.9 1111 68.4
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1692.6 1109 68.3
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1110 68.7
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1109 68.7
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1688.3 1109 68.6
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1686.4 1111 67.8
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1686.0 1111 68.1
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1684.8 1116 68.7
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1067 71.7
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1683.3 1109 68.4
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1679.5 1109 68.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1676.0 1112 67.4
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1674.4 1111 67.2
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1673.7 1110 67.5
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1672.1 1109 67.9
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1671.4 1109 68.2
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1669.4 1114 67.7
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1664.0 1092 69.7
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1657.9 1120 66.6
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1656.7 1108 67.0
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1652.1 1114 67.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1651.3 1102 68.1
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1651.0 1110 67.7
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1651.0 1127 67.3
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1649.8 1106 67.9
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1649.8 1108 67.1
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1649.4 1114 67.2
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1648.6 1104 68.0
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1648.3 1049 71.0
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1647.9 1224 62.6
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1110 67.1
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1646.3 1114 67.0
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1122 66.8
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1644.4 1105 67.8
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1640.9 1114 67.1
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1640.2 1110 67.0
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1639.0 1111 67.0
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1639.0 1113 66.4
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1637.1 1112 67.4
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1636.7 1110 67.1
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1636.7 1120 66.3
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1636.3 1110 66.0
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1635.5 1103 67.7
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1635.2 1116 66.7
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1635.2 1123 66.3
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1633.2 1108 66.3
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1632.5 1118 66.0
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1632.1 1114 66.5
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1631.7 1110 66.8
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1629.4 1109 66.5
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1629.0 1123 65.7
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1626.7 1108 66.5
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1626.3 1108 66.5
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1625.9 1110 66.2
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1611.7 1105 67.3
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1608.6 1097 66.5
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1607.4 1095 66.6
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1588.2 1110 65.2
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1586.2 1100 65.8
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1580.1 1073 67.1
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1566.2 1112 64.8
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1563.9 1117 64.5
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1555.8 1139 63.1
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1540.4 1118 62.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1530.8 987 69.7
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1522.3 1116 62.0
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1521.5 1001 69.7
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1509.6 1167 61.7
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1495.3 1081 63.5
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1382.5 898 70.0
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1352.8 924 66.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1305.0 1131 54.3
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1271.9 1111 53.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1248.0 1114 53.1
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1231.9 831 67.7
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1199.9 829 65.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1198.7 749 72.2
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1150.2 1122 50.1
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1139.0 738 69.5
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1130.2 760 68.0
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.1e-305 1053.5 1129 48.2
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 8.0e-304 1047.3 667 71.4
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.7e-288 995.0 572 82.7
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.2e-268 929.1 688 62.2
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.4e-244 850.5 693 59.2
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.1e-241 840.9 498 77.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.3e-215 752.3 518 66.6
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.3e-213 747.7 518 66.6
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.1e-164 585.1 1504 29.9
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 9.0e-162 575.5 382 68.6
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.7e-147 526.9 270 90.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.3e-144 518.5 606 46.0
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 7.4e-132 476.1 284 74.6
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 4.5e-113 413.7 240 76.2
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 2.7e-110 404.4 588 39.5
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 8.8e-101 372.9 828 30.6
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 2.3e-88 331.6 193 73.6
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.0e-85 320.9 156 90.4
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 1.7e-80 305.4 258 54.7
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.8e-77 295.4 201 65.7
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 2.6e-76 291.6 174 75.3
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.3e-67 262.7 208 61.1
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 4.1e-58 231.1 130 75.4
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 3.5e-57 228.0 209 51.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 2.0e-52 212.2 164 60.4
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 9.9e-52 209.9 123 73.2
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 3.5e-41 174.9 124 64.5
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.1e-33 149.1 105 58.1
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 6.0e-33 147.5 195 42.6
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.0e-32 146.7 136 47.8
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-31 142.9 82 74.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 2.5e-31 142.1 174 45.4
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 3.3e-31 141.7 137 52.6
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 4.3e-31 141.4 85 72.9
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.5e-28 131.3 75 73.3
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-27 129.8 144 47.2
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 1.7e-27 129.4 69 79.7
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-26 126.7 135 48.9
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 9.3e-26 123.6 114 54.4
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 2.7e-25 122.1 134 45.5
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 7.4e-23 114.0 96 56.2
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.8e-21 109.4 53 86.8
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 5.8e-20 104.4 66 69.7
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 3.2e-18 98.6 133 43.6
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 1.8e-16 92.8 100 45.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 3.7e-14 85.1 86 50.0
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 8.2e-14 84.0 84 48.8
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 5.3e-13 81.3 88 48.9
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.2e-12 80.1 48 72.9
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 2.0e-12 79.3 45 75.6
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 4.5e-12 78.2 56 58.9
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.3e-11 76.6 45 75.6
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 1.1e-10 73.6 45 71.1
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 5.7e-07 61.2 31 83.9


User provided reference genes

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