Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 2.2e-140 502.3 251 100.0
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 8.3e-140 500.4 251 99.6
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 6.6e-137 490.7 251 98.4
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 2.5e-136 488.8 251 97.2
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 3.5e-130 468.4 249 92.4
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 4.3e-120 434.9 234 90.6
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 2.0e-117 426.0 249 83.1
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 2.6e-117 425.6 251 83.3
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.4e-117 425.2 225 92.4
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 2.2e-116 422.5 249 81.9
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 3.7e-116 421.8 251 82.1
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 4.9e-116 421.4 251 80.5
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 6.4e-116 421.0 251 81.7
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 1.1e-115 420.2 249 80.7
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 2.4e-115 419.1 250 80.8
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 5.4e-115 417.9 249 81.1
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 5.4e-115 417.9 251 80.1
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 5.4e-115 417.9 251 80.1
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 2.1e-114 416.0 251 79.7
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.6e-114 414.8 251 80.5
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 4.6e-114 414.8 251 80.1
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 6.0e-114 414.5 251 79.7
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 1.3e-113 413.3 249 80.3
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 1.7e-113 412.9 250 81.2
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 1.7e-113 412.9 249 80.3
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 1.7e-113 412.9 251 78.9
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 2.3e-113 412.5 247 81.0
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 3.9e-113 411.8 249 80.3
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 5.1e-113 411.4 251 79.7
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 8.6e-113 410.6 251 79.3
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 1.9e-112 409.5 247 80.2
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 1.9e-112 409.5 251 80.5
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 1.9e-112 409.5 251 79.3
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 4.3e-112 408.3 249 79.1
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 4.3e-112 408.3 251 78.5
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 4.3e-112 408.3 251 78.5
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 4.3e-112 408.3 251 80.1
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 4.3e-112 408.3 251 76.9
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 7.3e-112 407.5 249 79.5
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 9.5e-112 407.1 247 79.8
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 1.2e-111 406.8 249 79.5
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 2.8e-111 405.6 251 78.9
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 2.8e-111 405.6 251 79.3
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 4.7e-111 404.8 249 79.1
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 6.2e-111 404.4 248 78.2
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 8.1e-111 404.1 251 79.7
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 8.1e-111 404.1 251 77.7
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 1.1e-110 403.7 251 79.7
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.1e-110 403.7 251 79.7
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 1.1e-110 403.7 249 77.9
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 1.8e-110 402.9 251 80.9
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 3.1e-110 402.1 247 79.4
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 4.0e-110 401.7 251 78.9
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 5.2e-110 401.4 249 78.3
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 8.9e-110 400.6 251 79.7
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 8.9e-110 400.6 251 79.7
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 1.5e-109 399.8 249 77.9
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 1.5e-109 399.8 249 77.9
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 2.0e-109 399.4 249 78.3
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 2.0e-109 399.4 249 79.1
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 2.6e-109 399.1 249 77.5
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 4.4e-109 398.3 251 78.1
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 5.4e-107 391.3 251 76.1
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 2.1e-106 389.4 251 74.5
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 2.7e-106 389.0 249 74.3
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 6.0e-106 387.9 254 75.6
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 2.3e-105 386.0 249 77.5
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 3.3e-104 382.1 253 75.5
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 4.7e-103 378.3 249 72.3
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 1.1e-102 377.1 249 73.9
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.4e-102 376.7 252 73.4
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 8.9e-102 374.0 241 75.1
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 8.9e-102 374.0 253 73.1
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 8.9e-102 374.0 254 73.6
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 1.5e-101 373.2 253 72.7
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 2.0e-101 372.9 248 74.2
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 3.4e-101 372.1 248 74.2
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 1.3e-100 370.2 248 73.8
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 1.3e-100 370.2 252 74.2
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.2e-100 369.4 221 80.1
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 3.8e-100 368.6 259 71.0
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 6.4e-100 367.9 248 73.8
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 8.4e-100 367.5 248 73.8
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 8.4e-100 367.5 248 71.8
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 1.4e-99 366.7 248 71.8
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 3.2e-99 365.5 225 77.8
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 7.1e-99 364.4 248 71.4
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 9.3e-99 364.0 225 78.7
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 2.1e-98 362.8 249 71.1
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 3.5e-98 362.1 248 72.2
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 3.5e-98 362.1 248 72.6
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 3.5e-98 362.1 248 72.6
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 1.7e-97 359.8 238 72.3
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 1.7e-97 359.8 248 71.0
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 1.7e-97 359.8 248 71.0
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 1.7e-97 359.8 248 71.0
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 3.0e-97 359.0 248 71.4
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 1.5e-96 356.7 235 73.6
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 1.9e-96 356.3 248 71.4
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 2.5e-96 355.9 248 71.8
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 4.3e-96 355.1 215 79.5
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 1.6e-95 353.2 248 71.4
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 8.1e-95 350.9 251 69.3
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 6.4e-92 341.3 223 76.2
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 7.3e-88 327.8 250 65.6
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 2.6e-85 319.3 244 63.9
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 4.5e-85 318.5 253 62.8
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 1.1e-75 287.3 225 63.6
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 1.4e-75 287.0 196 69.4
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 1.8e-73 280.0 163 81.0
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 5.1e-73 278.5 196 68.4
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 1.5e-72 276.9 173 74.6
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 6.5e-68 261.5 172 74.4
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 2.1e-66 256.5 277 50.9
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 1.5e-53 213.8 143 75.5
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 8.8e-49 198.0 163 62.6
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 7.4e-48 194.9 262 43.1
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 3.6e-34 149.4 91 79.1
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 1.5e-32 144.1 85 82.4
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 2.8e-31 139.8 291 33.3
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 4.1e-30 136.0 88 69.3
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 3.5e-29 132.9 94 70.2
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 4.2e-27 125.9 124 51.6
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 2.2e-23 113.6 287 32.8
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 3.3e-19 99.8 60 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 4.0e-17 92.8 53 79.2
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 3.7e-15 86.3 61 57.4
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 5.4e-14 82.4 52 73.1
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 3.2e-06 56.6 34 79.4


User provided reference genes

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