Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 5.9e-283 976.9 494 100.0
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 6.2e-232 807.4 403 96.3
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 6.5e-213 744.2 403 88.3
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 5.2e-194 681.4 403 78.7
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 9.7e-193 677.2 405 79.3
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.2e-190 670.2 410 78.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.2e-184 647.5 386 79.3
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.6e-166 590.1 404 68.8
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.7e-160 570.1 400 65.8
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.4e-159 567.0 399 66.7
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.8e-159 566.6 400 65.0
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.4e-159 566.2 399 66.4
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 4.1e-159 565.5 427 63.2
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.0e-157 560.8 403 65.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 5.0e-157 558.5 412 65.8
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 8.6e-157 557.8 403 63.3
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.1e-156 557.4 405 65.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.1e-156 557.4 400 64.2
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.1e-156 557.4 407 63.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.5e-156 556.2 401 65.1
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 7.3e-156 554.7 403 64.5
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.1e-155 553.1 407 63.9
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.8e-155 552.7 395 64.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.7e-155 552.0 403 63.3
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.7e-155 552.0 403 64.3
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 6.2e-155 551.6 395 66.6
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 8.0e-155 551.2 398 62.8
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.3e-154 549.7 406 63.8
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-154 549.7 403 63.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.3e-154 549.7 403 63.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 6.8e-154 548.1 399 63.7
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.8e-154 548.1 401 63.6
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 8.9e-154 547.7 406 62.8
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 8.9e-154 547.7 404 61.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-153 547.0 401 63.1
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.0e-153 546.6 403 63.0
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.6e-153 546.2 400 63.2
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.4e-153 545.4 406 62.1
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.8e-153 545.0 396 63.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 5.8e-153 545.0 396 63.4
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.8e-153 544.3 396 65.2
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-152 543.9 405 63.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 6.4e-152 541.6 396 65.9
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.4e-152 541.6 400 63.2
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 6.4e-152 541.6 406 62.3
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 8.3e-152 541.2 406 61.8
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.1e-151 540.8 403 61.8
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.1e-151 540.8 400 63.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-151 540.8 401 61.8
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.4e-151 540.4 399 63.7
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 5.4e-151 538.5 402 61.4
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.0e-151 538.1 400 62.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 9.2e-151 537.7 413 63.7
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.6e-150 537.0 398 62.8
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.0e-150 536.6 398 61.8
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.6e-150 535.4 400 62.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.8e-150 534.6 405 63.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.0e-149 534.3 396 63.9
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 5.0e-149 531.9 393 62.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 6.6e-149 531.6 403 61.0
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-148 530.4 406 61.3
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.5e-148 530.4 406 61.3
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.5e-148 529.6 405 61.2
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 4.3e-148 528.9 406 61.1
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 5.6e-148 528.5 400 62.0
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 7.3e-148 528.1 399 61.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 7.3e-148 528.1 406 61.1
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 9.5e-148 527.7 406 61.1
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.6e-147 526.9 398 60.6
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.1e-147 526.6 401 60.1
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.8e-147 526.2 393 61.1
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 4.7e-147 525.4 401 61.1
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 6.2e-147 525.0 393 60.8
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 8.1e-147 524.6 411 60.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 3.1e-146 522.7 407 60.4
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.1e-146 522.7 391 61.4
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.0e-146 522.3 397 61.5
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.2e-146 521.9 391 61.1
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.5e-145 520.4 414 59.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.0e-145 520.0 403 60.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.3e-144 517.3 397 61.0
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.3e-144 517.3 419 58.7
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-144 516.9 388 62.6
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-144 516.9 388 62.6
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.2e-144 516.5 399 60.9
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.2e-144 516.5 402 59.2
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 4.9e-144 515.4 407 58.5
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.9e-144 515.4 403 60.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 8.3e-144 514.6 388 61.3
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.9e-143 513.5 416 58.7
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.9e-143 513.5 395 59.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 4.1e-143 512.3 400 60.0
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.4e-143 511.9 384 62.8
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.6e-142 510.4 394 59.4
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 4.6e-142 508.8 390 61.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 4.6e-142 508.8 401 59.4
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 7.8e-142 508.1 415 57.3
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 7.8e-142 508.1 388 58.8
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.5e-140 503.8 417 57.8
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.3e-140 502.7 392 57.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.3e-140 502.7 387 60.5
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 7.3e-140 501.5 392 58.9
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.2e-139 500.7 392 57.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.1e-139 500.0 388 60.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.1e-139 500.0 388 57.5
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 3.1e-138 496.1 388 57.7
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 4.0e-138 495.7 388 58.2
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 6.8e-138 495.0 388 60.1
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.9e-137 491.1 398 59.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-136 490.3 377 61.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-136 490.3 377 61.0
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 8.4e-136 488.0 403 58.3
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.9e-135 486.9 391 56.5
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 5.4e-135 485.3 405 57.8
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 5.4e-135 485.3 384 59.6
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.4e-130 469.9 404 54.5
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 4.2e-127 459.1 388 53.9
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.8e-126 454.9 415 55.2
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.4e-119 433.3 400 53.2
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 3.9e-117 426.0 409 50.6
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 5.6e-116 422.2 409 48.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.6e-115 420.6 401 51.1
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.4e-114 417.5 391 50.9
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.0e-113 413.7 410 49.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.2e-110 404.4 400 51.5
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 5.1e-109 399.1 398 50.8
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.3e-108 396.0 373 52.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.8e-107 393.3 392 51.3
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.1e-102 377.1 414 45.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 6.0e-102 375.6 398 46.0
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.5e-97 360.9 407 47.9
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.7e-96 357.5 411 43.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.0e-92 344.0 396 42.7
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.5e-84 317.8 400 44.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 7.7e-81 305.4 396 43.7
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 2.9e-80 303.5 394 42.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 5.0e-80 302.8 403 42.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-79 301.2 249 57.0
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 5.3e-74 282.7 403 40.0
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.6e-73 280.4 287 48.8
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-66 258.1 186 64.0
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.7e-64 251.1 228 55.3
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.5e-63 248.1 398 38.9
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 4.1e-58 229.9 156 64.1
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.2e-54 218.4 434 31.1
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.1e-38 164.5 155 52.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 8.9e-37 159.1 119 63.9
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.0e-34 149.4 389 28.5
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-30 136.7 100 63.0
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.1e-26 125.6 319 27.3
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.7e-24 118.2 78 67.9
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 5.1e-16 90.1 401 23.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.2e-09 68.9 47 59.6
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.5e-09 67.4 40 72.5
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 9.6e-07 59.3 58 51.7
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 1.6e-06 58.5 454 22.9


User provided reference genes

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