Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006220.4 Solanum lycopersicum HOM05D000888 ORTHO05D000740 2.8e-88 328.6 162 100.0
Sopen08g002190 Solanum pennellii HOM05D000888 ORTHO05D000740 2.1e-72 275.8 266 59.0
CAN.G1238.26 Capsicum annuum HOM05D000888 ORTHO05D000740 2.1e-43 179.5 121 73.6
Sopen08g002210 Solanum pennellii HOM05D000888 ORTHO05D000740 3.1e-39 165.6 108 75.0
Sopen08g002240 Solanum pennellii HOM05D000888 ORTHO05D000740 6.1e-35 151.4 105 68.6
CAN.G137.57 Capsicum annuum HOM05D000888 ORTHO05D000740 1.0e-34 150.6 123 62.6
CAN.G757.4 Capsicum annuum HOM05D000888 ORTHO05D000740 1.0e-34 150.6 132 59.1
Nitab4.5_0006661g0040 Nicotiana tabacum HOM05D000888 ORTHO05D000740 8.8e-34 147.5 157 55.4
Peaxi162Scf00045g01642 Petunia axillaris HOM05D000888 ORTHO05D000740 1.5e-33 146.7 126 61.1
Solyc08g006210.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 2.6e-33 146.0 142 51.4
Sopen08g002180 Solanum pennellii HOM05D000888 ORTHO05D000740 7.4e-33 144.4 142 50.7
PGSC0003DMG400043722 Solanum tuberosum HOM05D000888 ORTHO05D000740 1.4e-31 140.2 116 61.2
CAN.G241.37 Capsicum annuum HOM05D000888 ORTHO05D000740 1.8e-31 139.8 179 45.3
PGSC0003DMG400026314 Solanum tuberosum HOM05D000888 ORTHO05D000740 4.5e-30 135.2 157 51.6
Nitab4.5_0000025g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.5e-28 130.2 265 37.4
Nitab4.5_0010282g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.6e-27 126.7 261 36.0
CAN.G137.56 Capsicum annuum HOM05D000888 ORTHO05D000740 6.1e-27 124.8 143 49.0
CAN.G220.18 Capsicum annuum HOM05D000886 ORTHO05D000525 1.8e-26 123.2 105 61.9
Solyc08g006200.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 3.0e-26 122.5 115 51.3
CAN.G546.36 Capsicum annuum HOM05D000888 ORTHO05D000740 6.7e-26 121.3 105 58.1
Sopen08g002160 Solanum pennellii HOM05D000888 ORTHO05D000740 8.8e-26 120.9 117 49.6
Solyc08g006190.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 1.1e-25 120.6 111 50.5
CAN.G1941.1 Capsicum annuum HOM05D000888 ORTHO05D000740 2.0e-25 119.8 99 57.6
CAN.G137.44 Capsicum annuum HOM05D000888 ORTHO05D000740 3.3e-25 119.0 99 55.6
CAN.G1342.8 Capsicum annuum HOM05D000888 ORTHO05D000740 4.4e-25 118.6 96 62.5
CAN.G673.4 Capsicum annuum HOM05D000888 ORTHO05D000740 1.3e-24 117.1 121 53.7
PGSC0003DMG401009541 Solanum tuberosum HOM05D000888 ORTHO05D000740 2.8e-24 115.9 145 48.3
Nitab4.5_0012696g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 3.7e-24 115.5 120 52.5
Peaxi162Scf00326g00321 Petunia axillaris HOM05D000888 ORTHO05D000740 5.3e-23 111.7 113 51.3
Dinv01509 Davidia involucrata HOM05D000888 ORTHO05D000740 7.0e-23 111.3 165 39.4
Dinv00373 Davidia involucrata HOM05D000888 ORTHO05D000740 1.6e-22 110.2 165 38.8
CAN.G1238.29 Capsicum annuum HOM05D000888 ORTHO05D000740 2.0e-22 109.8 157 43.3
Nitab4.5_0000555g0110 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.0e-22 109.8 155 45.2
CAN.G220.23 Capsicum annuum HOM05D000888 ORTHO05D000740 2.2e-21 106.3 111 51.4
Peaxi162Scf00205g00721 Petunia axillaris HOM05D000888 ORTHO05D000740 3.8e-21 105.5 153 43.1
Sopen08g002220 Solanum pennellii HOM05D000888 ORTHO05D000740 3.8e-21 105.5 158 41.8
CAN.G757.8 Capsicum annuum HOM05D000888 ORTHO05D000740 5.0e-21 105.1 65 73.8
Nitab4.5_0008877g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.5e-21 104.8 154 42.2
PGSC0003DMG400013589 Solanum tuberosum HOM05D000888 ORTHO05D000740 1.1e-20 104.0 154 39.6
Solyc08g006240.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 1.9e-20 103.2 158 41.1
Cc08_g08270 Coffea canephora HOM05D000888 ORTHO05D000740 9.4e-20 100.9 157 38.2
Nitab4.5_0013923g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.2e-19 100.5 153 41.2
CAN.G137.58 Capsicum annuum HOM05D000888 ORTHO05D000740 2.7e-19 99.4 160 38.1
CAN.G241.36 Capsicum annuum HOM05D000888 ORTHO05D000740 2.7e-19 99.4 99 52.5
Sopen08g002170 Solanum pennellii HOM05D000888 ORTHO05D000740 3.6e-19 99.0 153 37.9
Sopen08g002450 Solanum pennellii HOM05D000301 ORTHO05D000303 3.6e-19 99.0 120 50.0
CAN.G673.5 Capsicum annuum HOM05D000888 ORTHO05D000740 4.7e-19 98.6 159 39.0
PGSC0003DMG402009541 Solanum tuberosum HOM05D000888 ORTHO05D000740 4.7e-19 98.6 153 39.9
CAN.G757.1 Capsicum annuum HOM05D000888 ORTHO05D000740 6.1e-19 98.2 164 36.0
Nitab4.5_0012696g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 4.0e-18 95.5 153 36.6
Nitab4.5_0000555g0080 Nicotiana tabacum HOM05D000888 ORTHO05D000740 5.2e-18 95.1 153 36.6
CAN.G220.19 Capsicum annuum HOM05D000886 ORTHO05D000525 6.8e-18 94.7 77 64.9
Sopen08g002250 Solanum pennellii HOM05D000888 ORTHO05D000740 1.2e-17 94.0 163 35.6
Nitab4.5_0000555g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.6e-17 92.8 98 51.0
CAN.G1342.9 Capsicum annuum HOM05D000888 ORTHO05D000740 7.5e-17 91.3 153 38.6
Nitab4.5_0008877g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.3e-16 90.5 156 36.5
CAN.G241.28 Capsicum annuum HOM05D000888 ORTHO05D000740 4.8e-16 88.6 162 35.2
CAN.G757.7 Capsicum annuum HOM05D000888 ORTHO05D000740 4.8e-16 88.6 121 45.5
Solyc08g006483.1 Solanum lycopersicum HOM05D000888 ORTHO05D000740 6.3e-16 88.2 167 34.7
TWI63G1187 Tripterygium wilfordii HOM05D000888 ORTHO05D000740 6.3e-16 88.2 159 36.5
Nitab4.5_0000025g0040 Nicotiana tabacum HOM05D000888 ORTHO05D000740 8.3e-16 87.8 150 39.3
Nitab4.5_0010282g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 8.3e-16 87.8 146 40.4
CAN.G220.17 Capsicum annuum HOM05D000888 ORTHO05D000740 1.1e-15 87.4 117 47.0
Lsat_1_v5_gn_1_43960 Lactuca sativa HOM05D000888 ORTHO05D000740 1.4e-15 87.0 177 34.5
Cc07_g12890 Coffea canephora HOM05D000888 ORTHO05D000740 4.1e-15 85.5 116 36.2
Lsat_1_v5_gn_1_43540 Lactuca sativa HOM05D000888 ORTHO05D000740 4.1e-15 85.5 96 43.8
Lsat_1_v5_gn_1_43600 Lactuca sativa HOM05D000888 ORTHO05D000740 4.1e-15 85.5 95 43.2
Actinidia06436 Actinidia chinensis HOM05D000888 ORTHO05D000740 1.2e-14 84.0 162 35.8
CAN.G346.7 Capsicum annuum HOM05D000888 ORTHO05D000740 1.2e-14 84.0 82 54.9
Cc07_g12880 Coffea canephora HOM05D000888 ORTHO05D000740 1.6e-14 83.6 155 34.8
Peaxi162Scf00192g01213 Petunia axillaris HOM05D000888 ORTHO05D000740 1.6e-14 83.6 152 32.9
Nitab4.5_0003259g0030 Nicotiana tabacum HOM05D000151 ORTHO05D000074 4.5e-14 82.0 163 36.2
CAN.G1632.18 Capsicum annuum HOM05D000888 ORTHO05D000740 1.0e-13 80.9 183 30.6
Peaxi162Scf01636g00008 Petunia axillaris HOM05D000888 ORTHO05D000740 1.0e-13 80.9 164 33.5
Peaxi162Scf00045g01638 Petunia axillaris HOM05D000888 ORTHO05D000740 2.9e-13 79.3 56 67.9
Nitab4.5_0000555g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 5.0e-13 78.6 223 30.0
Cc05_g09350 Coffea canephora HOM05D000888 ORTHO05D000740 1.1e-12 77.4 94 46.8
Solyc08g006230.4 Solanum lycopersicum HOM05D000888 ORTHO05D000740 1.1e-12 77.4 149 34.9
Nitab4.5_0007342g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.5e-12 77.0 173 30.6
Peaxi162Scf00346g00002 Petunia axillaris HOM05D000888 ORTHO05D000740 1.9e-12 76.6 65 56.9
Sopen08g002260 Solanum pennellii HOM05D000888 ORTHO05D000740 1.9e-12 76.6 121 36.4
Nitab4.5_0008877g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 3.2e-12 75.9 153 33.3
Cc08_g06160 Coffea canephora HOM05D000888 ORTHO05D000740 1.2e-11 73.9 93 39.8
Peaxi162Scf01723g00002 Petunia axillaris HOM05D000888 ORTHO05D000740 1.2e-11 73.9 65 55.4
Solyc08g006280.2 Solanum lycopersicum HOM05D000888 ORTHO05D000740 1.2e-11 73.9 100 38.0
Cc05_g09340 Coffea canephora HOM05D000888 ORTHO05D000740 2.1e-11 73.2 155 33.5
CAN.G950.1 Capsicum annuum HOM05D000888 ORTHO05D000740 2.7e-11 72.8 161 34.8
EL10Ac2g02424 Beta vulgaris HOM05D000888 ORTHO05D000740 6.1e-11 71.6 160 31.2
Thhalv10000130m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 1.0e-10 70.9 103 35.0
Nitab4.5_0000025g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.4e-10 70.5 190 31.1
Peaxi162Scf00192g01414 Petunia axillaris HOM05D000888 ORTHO05D000740 1.4e-10 70.5 98 36.7
AT2G24700 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 1.8e-10 70.1 158 27.8
BolC4t26980H Brassica oleracea HOM05D000888 ORTHO05D000740 2.3e-10 69.7 132 34.1
Sc07g0007340 Simmondsia chinensis HOM05D000888 ORTHO05D000740 3.0e-10 69.3 96 38.5
HanXRQChr01g0014891 Helianthus annuus HOM05D000888 ORTHO05D000740 4.0e-10 68.9 76 42.1
C04p54350 Brassica napus HOM05D000888 ORTHO05D000740 5.2e-10 68.6 118 32.2
Thhalv10028050m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 6.8e-10 68.2 158 31.0
Peaxi162Scf00045g01644 Petunia axillaris HOM05D000180 ORTHO05D000740 6.8e-10 68.2 119 37.8
AL4G15540 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 8.8e-10 67.8 94 44.7
BcaB06g27992 Brassica carinata HOM05D000430 ORTHO05D000305 8.8e-10 67.8 155 31.0
Lsat_1_v5_gn_3_109740 Lactuca sativa HOM05D009439 ORTHO05D010404 8.8e-10 67.8 166 34.3
AL4G15670 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 1.2e-09 67.4 94 43.6
HanXRQChr01g0030511 Helianthus annuus HOM05D000888 ORTHO05D000740 1.2e-09 67.4 96 33.3
CSS0028692 Camellia sinensis var. sinensis HOM05D000888 ORTHO05D000740 2.6e-09 66.2 173 32.9
Aqoxy6G00277 Aquilegia oxysepala HOM05D000888 ORTHO05D000740 3.4e-09 65.9 157 31.8
AL4G15420 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 4.4e-09 65.5 123 30.1
ECA233G5043 Erigeron canadensis HOM05D000888 ORTHO05D000740 7.5e-09 64.7 160 31.9
C08p39100 Brassica napus HOM05D000888 ORTHO05D000740 9.8e-09 64.3 97 32.0
BolC8t51482H Brassica oleracea HOM05D000888 ORTHO05D000740 9.8e-09 64.3 97 32.0
BraA09t41009Z Brassica rapa HOM05D000888 ORTHO05D000740 1.3e-08 63.9 114 30.7
Carub.0004s0418 Capsella rubella HOM05D000888 ORTHO05D000740 1.3e-08 63.9 156 26.3
CARHR117140 Cardamine hirsuta HOM05D000888 ORTHO05D000740 1.3e-08 63.9 124 29.8
AUR62020296 Chenopodium quinoa HOM05D000888 ORTHO05D000740 1.7e-08 63.5 155 29.7
ECA248G2946 Erigeron canadensis HOM05D000888 ORTHO05D000740 1.7e-08 63.5 97 39.2
A09p56140 Brassica napus HOM05D000888 ORTHO05D000740 2.2e-08 63.2 97 32.0
AT2G24645 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 2.8e-08 62.8 157 30.6
Lsat_1_v5_gn_5_32880 Lactuca sativa HOM05D000888 ORTHO05D000740 4.9e-08 62.0 93 35.5
Solyc08g006270.1 Solanum lycopersicum HOM05D000888 ORTHO05D000740 4.9e-08 62.0 89 38.2
Hund25584 Selenicereus undatus HOM05D000888 ORTHO05D000740 6.3e-08 61.6 87 39.1
C04p54280 Brassica napus HOM05D000888 ORTHO05D000740 8.3e-08 61.2 163 29.4
BraA03t11908Z Brassica rapa HOM05D000888 ORTHO05D000740 1.1e-07 60.8 105 32.4
Sp4g03630 Schrenkiella parvula HOM05D000888 ORTHO05D000740 1.1e-07 60.8 158 29.7
HanXRQChr01g0030501 Helianthus annuus HOM05D000888 ORTHO05D000740 1.4e-07 60.5 85 45.9
Manes.03G005400 Manihot esculenta HOM05D000888 ORTHO05D000740 1.4e-07 60.5 98 36.7
Nitab4.5_0008877g0040 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.8e-07 60.1 146 32.9
A03p26970 Brassica napus HOM05D000888 ORTHO05D000740 2.4e-07 59.7 105 31.4
Sp4g03680 Schrenkiella parvula HOM05D000888 ORTHO05D000740 2.4e-07 59.7 92 30.4
AL4G19670 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 3.1e-07 59.3 151 31.1
PSO724G0421 Papaver somniferum HOM05D000888 ORTHO05D000740 3.1e-07 59.3 108 29.6
AL4G15320 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 4.1e-07 58.9 99 37.4
AUR62002339 Chenopodium quinoa HOM05D000888 ORTHO05D000740 4.1e-07 58.9 100 36.0
BcaB04g18619 Brassica carinata HOM05D000888 ORTHO05D000740 5.4e-07 58.5 103 30.1
A09p40100 Brassica napus HOM05D000888 ORTHO05D000740 5.4e-07 58.5 101 29.7
CAN.G757.9 Capsicum annuum HOM05D000888 ORTHO05D000740 5.4e-07 58.5 38 76.3
Aa31sc15G210 Aethionema arabicum HOM05D000888 ORTHO05D000740 7.0e-07 58.2 150 25.3
Thhalv10000111m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 7.0e-07 58.2 140 30.7
Nitab4.5_0000555g0070 Nicotiana tabacum HOM05D000888 ORTHO05D000740 9.2e-07 57.8 39 76.9
CAN.G757.6 Capsicum annuum HOM05D000888 ORTHO05D000740 1.2e-06 57.4 79 40.5
CARHR117280 Cardamine hirsuta HOM05D000888 ORTHO05D000740 1.2e-06 57.4 153 29.4
AT4G00260 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 1.6e-06 57.0 147 27.9
C08p39110 Brassica napus HOM05D000888 ORTHO05D000740 1.6e-06 57.0 165 27.9
BolC8t51484H Brassica oleracea HOM05D000888 ORTHO05D000740 1.6e-06 57.0 165 27.9
Sopen11g021070 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-06 57.0 102 32.4
BcaC06g35128 Brassica carinata HOM05D000888 ORTHO05D000740 2.0e-06 56.6 102 33.3
A08p18500 Brassica napus HOM05D000888 ORTHO05D000740 2.0e-06 56.6 154 27.9
C07p19500 Brassica napus HOM05D000888 ORTHO05D000740 2.0e-06 56.6 80 40.0
BolC7t42468H Brassica oleracea HOM05D000888 ORTHO05D000740 2.0e-06 56.6 80 40.0
PGSC0003DMG400040663 Solanum tuberosum HOM05D000395 ORTHO05D010235 2.0e-06 56.6 143 25.2
BcaC05g29398 Brassica carinata HOM05D000888 ORTHO05D000740 2.7e-06 56.2 157 26.8
BcaC07g40912 Brassica carinata HOM05D000888 ORTHO05D000740 2.7e-06 56.2 97 33.0
C01p07410 Brassica napus HOM05D000888 ORTHO05D000740 2.7e-06 56.2 78 38.5
BolC1t00720H Brassica oleracea HOM05D000888 ORTHO05D000740 2.7e-06 56.2 78 38.5
BcaB03g12709 Brassica carinata HOM05D000888 ORTHO05D000740 3.5e-06 55.8 67 40.3
BcaB01g02993 Brassica carinata HOM05D000888 ORTHO05D011624 4.5e-06 55.5 103 32.0
A01p06650 Brassica napus HOM05D000888 ORTHO05D000740 4.5e-06 55.5 68 41.2
BraA08t33816Z Brassica rapa HOM05D000888 ORTHO05D000740 4.5e-06 55.5 67 40.3
BraA09t41010Z Brassica rapa HOM05D000888 ORTHO05D000740 4.5e-06 55.5 163 27.6
PSO135G0774 Papaver somniferum HOM05D000888 ORTHO05D000740 4.5e-06 55.5 131 26.0
Aa31LG2G18670 Aethionema arabicum HOM05D000888 ORTHO05D000740 5.9e-06 55.1 91 37.4
BcaC09g51941 Brassica carinata HOM05D000888 ORTHO05D000740 5.9e-06 55.1 81 39.5
Carub.0004s0431 Capsella rubella HOM05D000888 ORTHO05D000740 5.9e-06 55.1 110 34.5
Aa31sc142G80 Aethionema arabicum HOM05D000888 ORTHO05D000740 7.7e-06 54.7 91 37.4
C03p87770 Brassica napus HOM05D000888 ORTHO05D000740 7.7e-06 54.7 67 38.8
C05p57010 Brassica napus HOM05D000888 ORTHO05D000740 7.7e-06 54.7 157 26.8
BolC3t21090H Brassica oleracea HOM05D000888 ORTHO05D000740 7.7e-06 54.7 67 38.8
BolC5t34364H Brassica oleracea HOM05D000888 ORTHO05D000740 7.7e-06 54.7 157 24.2
Sp7g29440 Schrenkiella parvula HOM05D000888 ORTHO05D000740 7.7e-06 54.7 59 44.1


User provided reference genes

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