Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 9.7e-250 866.3 423 100.0
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 2.6e-247 858.2 423 99.3
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.7e-241 839.0 424 97.2
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.2e-230 802.0 423 92.0
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 7.2e-229 797.0 423 90.8
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.7e-228 795.0 413 92.5
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 5.9e-223 777.3 423 89.8
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.4e-203 713.0 423 80.1
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.9e-198 694.9 422 78.4
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 6.6e-198 694.1 422 78.2
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 5.8e-194 681.0 427 75.4
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 7.5e-186 654.1 480 67.5
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 8.3e-185 650.6 419 74.0
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 8.3e-185 650.6 433 72.1
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 5.4e-184 647.9 489 67.1
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 2.4e-179 632.5 423 71.4
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 1.9e-176 622.9 426 69.7
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 3.2e-176 622.1 412 71.8
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 9.2e-176 620.5 425 68.5
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 8.7e-174 614.0 425 67.8
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 4.3e-173 611.7 423 67.8
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 1.6e-172 609.8 425 69.2
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 2.1e-172 609.4 451 65.0
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 2.1e-172 609.4 423 68.3
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 1.8e-171 606.3 441 65.1
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 5.2e-171 604.7 423 67.8
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 6.9e-171 604.4 441 64.9
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.2e-169 599.4 427 67.4
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 4.9e-169 598.2 431 65.9
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 4.9e-169 598.2 430 70.0
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.1e-168 597.0 435 65.7
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 4.2e-168 595.1 418 66.5
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.2e-167 593.6 431 66.4
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 4.8e-164 581.6 437 65.2
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 1.1e-163 580.5 421 64.8
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 4.5e-162 575.1 425 65.4
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 5.8e-162 574.7 430 62.8
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 6.4e-161 571.2 424 64.4
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 6.4e-161 571.2 440 61.1
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 1.9e-160 569.7 464 59.9
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 7.1e-160 567.8 425 64.5
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 6.0e-159 564.7 371 72.5
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 7.9e-159 564.3 423 63.6
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.8e-158 563.1 432 62.3
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.5e-157 559.3 422 62.3
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 2.5e-157 559.3 430 62.1
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 4.3e-157 558.5 423 62.9
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 4.3e-157 558.5 423 62.9
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 5.6e-157 558.1 433 61.2
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 7.4e-157 557.8 424 63.9
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 7.4e-157 557.8 430 61.4
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 9.6e-157 557.4 423 62.9
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 9.6e-157 557.4 426 62.7
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 3.7e-156 555.4 435 62.5
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 1.8e-155 553.1 423 62.4
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 1.8e-155 553.1 423 62.4
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 1.8e-155 553.1 348 76.4
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 3.1e-155 552.4 421 62.7
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 4.0e-155 552.0 456 59.9
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 9.0e-155 550.8 421 62.5
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 9.0e-155 550.8 412 63.1
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 3.4e-154 548.9 422 62.1
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 9.9e-154 547.4 419 61.3
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.9e-153 545.8 452 59.1
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 4.9e-153 545.0 429 60.8
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.1e-152 543.9 420 62.4
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 7.9e-151 537.7 422 61.8
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 6.7e-150 534.6 425 60.2
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 1.0e-145 520.8 421 58.9
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.0e-145 520.8 444 56.3
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.9e-143 511.1 415 59.5
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 7.9e-143 511.1 422 58.3
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.5e-141 506.9 422 57.8
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 2.5e-141 506.1 422 57.6
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 9.7e-141 504.2 422 57.6
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 2.7e-135 486.1 427 56.2
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.5e-133 479.6 426 54.9
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 3.3e-133 479.2 392 59.4
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 1.8e-131 473.4 427 55.5
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 1.8e-131 473.4 427 55.5
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 7.2e-128 461.5 348 62.1
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.7e-127 459.5 426 53.5
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 4.7e-127 458.8 407 54.8
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 7.0e-123 444.9 457 53.4
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.3e-121 440.7 432 50.0
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 6.5e-121 438.3 348 62.6
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.5e-117 427.2 334 62.6
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 2.3e-110 403.3 446 45.5
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 6.1e-103 378.6 427 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 6.8e-102 375.2 415 45.8
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 1.7e-100 370.5 493 40.6
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 2.5e-96 356.7 249 68.3
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 9.5e-96 354.8 223 78.0
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 4.9e-92 342.4 206 78.2
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.0e-81 306.6 392 41.6
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 8.3e-76 288.5 190 68.4
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 1.0e-73 281.6 187 70.6
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.6e-66 257.7 183 61.7
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 4.6e-66 256.1 186 65.1
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 5.8e-53 212.6 158 62.7
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.0e-49 201.8 147 58.5
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.4e-43 181.4 106 77.4
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 1.9e-43 181.0 181 54.1
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 7.1e-43 179.1 181 53.6
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 7.1e-43 179.1 181 54.1
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 2.7e-42 177.2 103 80.6
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 4.6e-42 176.4 144 62.5
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 2.3e-41 174.1 152 53.9
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.6e-39 167.9 125 61.6
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.4e-38 164.1 132 58.3
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.0e-37 161.0 117 63.2
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 1.4e-35 154.8 126 63.5
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.6e-34 149.8 120 59.2
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 4.3e-32 143.3 74 86.5
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 2.1e-31 141.0 88 73.9
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 1.9e-27 127.9 72 79.2
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.2e-27 126.7 101 56.4
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 1.6e-26 124.8 85 69.4
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 6.1e-26 122.9 108 50.9
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 4.3e-24 116.7 83 63.9
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 6.9e-22 109.4 119 51.3
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.5e-21 108.2 72 65.3
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 4.5e-21 106.7 60 73.3
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 2.2e-20 104.4 58 75.9
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 2.4e-14 84.3 175 30.9
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 4.5e-13 80.1 53 66.0
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 1.3e-12 78.6 81 48.1
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 1.9e-11 74.7 51 62.7
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 3.2e-11 73.9 47 68.1
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 6.7e-09 66.2 37 70.3
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 8.8e-09 65.9 42 66.7
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 4.4e-08 63.5 42 64.3
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 9.7e-08 62.4 42 66.7
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 1.4e-06 58.5 100 37.0
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 5.3e-06 56.6 100 36.0


User provided reference genes

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