Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 8.5e-70 266.9 139 100.0
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 8.5e-70 266.9 139 100.0
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.3e-67 258.8 139 96.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.5e-63 244.6 140 90.7
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 7.2e-61 237.3 140 88.6
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.2e-60 236.5 139 89.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.2e-58 229.9 140 87.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 7.5e-58 227.3 140 84.3
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.7e-57 226.1 140 82.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.8e-57 225.3 138 83.3
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.8e-57 225.3 138 83.3
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-56 223.4 138 82.6
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.8e-56 222.6 142 81.0
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.8e-56 222.6 140 82.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 3.1e-56 221.9 140 81.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 4.1e-56 221.5 140 82.1
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 4.1e-56 221.5 140 82.9
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 5.4e-56 221.1 140 82.1
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 5.4e-56 221.1 140 81.4
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 9.1e-56 220.3 140 80.7
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.6e-55 219.5 140 80.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-55 219.2 140 80.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.5e-55 218.0 139 80.6
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.5e-55 218.0 139 80.6
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 4.5e-55 218.0 141 82.3
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 7.7e-55 217.2 140 80.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 79.9
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.3e-54 216.5 141 82.3
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.3e-54 216.5 140 80.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 80.0
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 81.4
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 80.7
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.9e-54 215.3 139 79.1
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.9e-54 215.3 139 79.1
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.9e-54 215.3 139 79.1
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 79.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 79.3
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 5.0e-54 214.5 139 79.9
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.0e-54 214.5 137 83.9
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 80.7
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 8.6e-54 213.8 139 79.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 80.0
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 80.0
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 79.3
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 79.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.1e-53 213.4 139 79.9
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 79.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 79.3
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 79.3
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 78.6
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 79.3
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 79.3
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 79.3
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.5e-53 212.2 140 80.0
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.3e-53 211.8 140 77.9
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 79.1
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.6e-53 211.1 140 78.6
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 5.6e-53 211.1 140 77.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 5.6e-53 211.1 134 84.3
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 5.6e-53 211.1 142 79.6
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.2e-53 210.7 139 79.9
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.2e-52 209.9 141 76.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.2e-52 209.9 140 78.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 77.1
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.8e-52 208.8 137 80.3
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 2.8e-52 208.8 139 79.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.8e-52 208.8 139 77.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 3.6e-52 208.4 139 77.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 77.9
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 4.7e-52 208.0 137 78.8
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 78.0
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 79.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 138 77.5
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.3e-51 205.7 140 77.1
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 3.0e-51 205.3 141 78.7
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 4.0e-51 204.9 139 76.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 8.9e-51 203.8 140 77.1
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 8.9e-51 203.8 140 76.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 3.4e-50 201.8 141 73.8
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 4.4e-50 201.4 140 75.7
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 4.4e-50 201.4 138 74.6
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.4e-50 201.4 135 79.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 7.5e-50 200.7 131 78.6
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 7.5e-50 200.7 140 75.7
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 9.8e-50 200.3 139 74.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 9.8e-50 200.3 140 74.3
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 74.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 79.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 74.5
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 4.9e-49 198.0 142 76.1
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 4.9e-49 198.0 139 74.8
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 4.9e-49 198.0 140 74.3
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 75.5
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-48 196.8 134 76.9
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.4e-48 196.4 133 77.4
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 143 72.0
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.4e-48 195.7 144 73.6
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 75.2
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.2e-48 195.3 140 75.7
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.0e-47 192.6 139 73.4
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.5e-47 191.8 139 73.4
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.5e-47 191.8 140 74.3
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 75.2
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 4.6e-47 191.4 139 74.1
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 4.6e-47 191.4 141 74.5
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 7.8e-47 190.7 139 75.5
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 7.8e-47 190.7 141 70.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.0e-46 190.3 140 74.3
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.0e-46 190.3 139 74.1
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.3e-46 189.9 144 71.5
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.3e-46 189.9 138 73.2
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.3e-46 189.9 140 72.1
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.3e-46 189.9 140 72.1
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.7e-46 189.5 139 71.9
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.0e-46 188.7 156 68.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.0e-46 188.7 140 73.6
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 72.9
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 72.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 6.6e-46 187.6 139 71.9
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.3e-45 184.1 139 73.4
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.1e-44 182.6 135 71.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 3.6e-44 181.8 135 71.9
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 8.0e-44 180.6 141 71.6
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 4.0e-43 178.3 139 68.3
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.7e-41 172.9 137 65.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 6.4e-41 171.0 140 67.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 4.1e-40 168.3 137 67.2
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.4e-40 167.9 109 76.1
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.6e-39 166.4 153 64.1
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 6.0e-39 164.5 91 89.0
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.9e-37 159.5 141 61.0
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.1e-35 153.7 139 57.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.1e-35 153.7 159 60.4
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.4e-35 153.3 140 63.6
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 4.0e-35 151.8 88 84.1
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 4.4e-34 148.3 137 55.5
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.5e-34 147.5 140 62.1
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.9e-33 145.6 147 57.1
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.7e-33 145.2 114 67.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.2e-31 140.2 139 53.2
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.7e-31 139.0 138 55.8
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 6.0e-31 137.9 90 81.1
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.3e-30 136.0 136 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 3.0e-30 135.6 119 59.7
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 8.6e-30 134.0 147 51.7
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.9e-29 132.9 147 54.4
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.3e-29 131.0 139 54.7
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.6e-28 128.6 138 55.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.4e-26 122.1 90 74.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 3.9e-22 108.6 89 66.3
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 3.3e-21 105.5 53 90.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.6e-20 102.1 88 54.5
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-19 100.5 67 68.7
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.9e-17 92.4 136 47.8
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.9e-17 92.4 139 44.6
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.7e-15 85.9 79 64.6
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.3e-13 79.0 85 55.3
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 9.3e-08 60.8 136 39.0
PSO541G1472 Papaver somniferum HOM05D004382 ORTHO05D005181 8.7e-06 54.3 33 69.7


User provided reference genes

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