Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065400.3 Solanum lycopersicum HOM05D003514 ORTHO05D019463 3.4e-51 204.9 118 100.0
PGSC0003DMG400022178 Solanum tuberosum HOM05D003514 ORTHO05D004280 4.1e-41 171.4 119 89.1
Nitab4.5_0003876g0040 Nicotiana tabacum HOM05D003514 ORTHO05D004280 1.1e-30 136.7 133 62.4
Nitab4.5_0000461g0200 Nicotiana tabacum HOM05D003514 ORTHO05D004280 1.4e-28 129.8 128 62.5
Peaxi162Scf00612g00020 Petunia axillaris HOM05D003514 ORTHO05D004280 5.8e-27 124.4 126 61.9
Actinidia35392 Actinidia chinensis HOM05D003514 ORTHO05D004280 9.3e-25 117.1 130 54.6
Nitab4.5_0003491g0030 Nicotiana tabacum HOM05D003514 ORTHO05D004280 4.6e-24 114.8 138 50.0
Solyc10g006020.3 Solanum lycopersicum HOM05D003514 ORTHO05D004280 4.6e-24 114.8 131 57.3
Sopen10g001980 Solanum pennellii HOM05D003514 ORTHO05D004280 4.6e-24 114.8 131 57.3
Hma1.2p1_0036F.1_g022520 Hydrangea macrophylla HOM05D003514 ORTHO05D004280 1.3e-23 113.2 129 61.2
Dinv40846 Davidia involucrata HOM05D003514 ORTHO05D004280 2.3e-23 112.5 72 73.6
Peaxi162Scf00836g00005 Petunia axillaris HOM05D003514 ORTHO05D004280 3.0e-23 112.1 119 63.9
CAN.G492.34 Capsicum annuum HOM05D003514 ORTHO05D004280 5.1e-23 111.3 73 71.2
TAR629G0630 Trochodendron aralioides HOM05D003514 ORTHO05D004280 6.6e-23 110.9 131 58.0
Sopen07g033600 Solanum pennellii HOM05D003514 ORTHO05D019463 1.5e-22 109.8 73 93.2
Rhsim04G0013400 Rhododendron simsii HOM05D003514 ORTHO05D004280 2.5e-22 109.0 130 58.5
TAR629G1690 Trochodendron aralioides HOM05D003514 ORTHO05D004280 4.3e-22 108.2 130 53.1
Migut.M01662 Erythranthe guttata HOM05D003514 ORTHO05D004280 1.3e-21 106.7 132 52.3
MSTRG.15789 Avicennia marina HOM05D003514 ORTHO05D004280 3.6e-21 105.1 125 53.6
Lj3A846G58 Lonicera japonica HOM05D003514 ORTHO05D004280 8.1e-21 104.0 130 53.1
Oeu041433.1 Olea europaea HOM05D003514 ORTHO05D004280 2.4e-20 102.4 73 68.5
Nitab4.5_0006756g0050 Nicotiana tabacum HOM05D003514 ORTHO05D004280 3.1e-20 102.1 142 47.2
Glyma.14G014300 Glycine max HOM05D003514 ORTHO05D004280 6.9e-20 100.9 112 51.8
SGA_v2.0_scaffold171G38881 Striga asiatica HOM05D003514 ORTHO05D004280 1.2e-19 100.1 73 64.4
Sabra16G0239700 Salix brachista HOM05D003514 ORTHO05D004280 1.5e-19 99.8 71 64.8
SalBow8G2437 Salvia bowleyana HOM05D003514 ORTHO05D004280 2.6e-19 99.0 99 51.5
Potri.001G364500 Populus trichocarpa HOM05D003514 ORTHO05D004280 3.4e-19 98.6 71 64.8
Glyma.02G299400 Glycine max HOM05D003514 ORTHO05D004280 1.3e-18 96.7 73 61.6
Hma1.2p1_0889F.1_g232830 Hydrangea macrophylla HOM05D003514 ORTHO05D004280 1.3e-18 96.7 73 69.9
Potri.011G093000 Populus trichocarpa HOM05D003514 ORTHO05D004280 1.3e-18 96.7 70 62.9
MSTRG.6991 Avicennia marina HOM05D003514 ORTHO05D004280 2.9e-18 95.5 129 52.7
Nn3g20020 Nelumbo nucifera HOM05D003514 ORTHO05D004280 2.9e-18 95.5 71 64.8
GSVIVG01014657001 Vitis vinifera HOM05D003514 ORTHO05D004280 2.9e-18 95.5 101 54.5
CsaV3_7G018300 Cucumis sativus L. HOM05D003514 ORTHO05D004280 6.4e-18 94.4 96 50.0
HanXRQChr15g0477881 Helianthus annuus HOM05D003514 ORTHO05D004280 8.4e-18 94.0 71 64.8
QL08p004743 Quercus lobata HOM05D003514 ORTHO05D004280 1.1e-17 93.6 73 58.9
GSVIVG01030074001 Vitis vinifera HOM05D003514 ORTHO05D004280 1.1e-17 93.6 71 64.8
LjContig00081g0004982 Lotus japonicus HOM05D003514 ORTHO05D004280 1.4e-17 93.2 71 60.6
Lsat_1_v5_gn_3_47521 Lactuca sativa HOM05D003514 ORTHO05D004280 1.9e-17 92.8 66 65.2
MELO3C024922.2 Cucumis melo HOM05D003514 ORTHO05D004280 5.4e-17 91.3 96 52.1
CiPaw.12G137000 Carya illinoinensis HOM05D003514 ORTHO05D004280 9.3e-17 90.5 71 56.3
CDE04G0478 Ceratophyllum demersum HOM05D003514 ORTHO05D004280 1.2e-16 90.1 119 43.7
Eucgr.F02057 Eucalyptus grandis HOM05D003514 ORTHO05D004280 1.2e-16 90.1 96 61.5
SGA_v2.0_scaffold168G38540 Striga asiatica HOM05D003514 ORTHO05D004280 1.6e-16 89.7 58 72.4
HanXRQChr17g0544151 Helianthus annuus HOM05D003514 ORTHO05D004280 2.1e-16 89.4 71 62.0
Manes.03G140200 Manihot esculenta HOM05D003514 ORTHO05D004280 2.7e-16 89.0 71 54.9
Manes.03G140201 Manihot esculenta HOM05D003514 ORTHO05D004280 2.7e-16 89.0 71 54.9
Phvul.008G278100 Phaseolus vulgaris HOM05D003514 ORTHO05D004280 2.7e-16 89.0 112 45.5
CDE06G2162 Ceratophyllum demersum HOM05D003514 ORTHO05D004280 3.5e-16 88.6 119 42.9
Ciclev10010336m.g Citrus clementina HOM05D003514 ORTHO05D004280 3.5e-16 88.6 96 46.9
Cc05_g14840 Coffea canephora HOM05D003514 ORTHO05D004280 3.5e-16 88.6 71 60.6
Lsat_1_v5_gn_7_29221 Lactuca sativa HOM05D003514 ORTHO05D004280 3.5e-16 88.6 70 60.0
PSO302G0247 Papaver somniferum HOM05D003514 ORTHO05D004280 6.0e-16 87.8 70 60.0
TPR.G8583 Trifolium pratense HOM05D003514 ORTHO05D004280 6.0e-16 87.8 110 44.5
ClCG09G021200 Citrullus lanatus HOM05D003514 ORTHO05D004280 7.9e-16 87.4 69 60.9
FvH4_3g29430 Fragaria vesca HOM05D003514 ORTHO05D004280 1.8e-15 86.3 99 46.5
FAN11G0050 Fragaria x ananassa HOM05D003514 ORTHO05D004280 1.8e-15 86.3 99 46.5
Nn1g07909 Nelumbo nucifera HOM05D003514 ORTHO05D004280 1.8e-15 86.3 72 61.1
Prupe.4G241500 Prunus persica HOM05D003514 ORTHO05D004280 2.3e-15 85.9 72 56.9
FAN21G2080 Fragaria x ananassa HOM05D003514 ORTHO05D004280 5.1e-15 84.7 93 47.3
MD03G1185000 Malus domestica HOM05D003514 ORTHO05D004280 5.1e-15 84.7 128 46.1
PSO210G4970 Papaver somniferum HOM05D003514 ORTHO05D004280 5.1e-15 84.7 69 58.0
PGR083G0192 Punica granatum HOM05D003514 ORTHO05D004280 5.1e-15 84.7 125 44.0
FAN25G3705 Fragaria x ananassa HOM05D003514 ORTHO05D004280 6.7e-15 84.3 74 54.1
MD11G1201300 Malus domestica HOM05D003514 ORTHO05D004280 8.7e-15 84.0 126 44.4
Medtr5g095530 Medicago truncatula HOM05D003514 ORTHO05D004280 1.5e-14 83.2 71 53.5
Sed0002134 Sechium edule HOM05D003514 ORTHO05D004280 1.9e-14 82.8 65 60.0
arahy.Tifrunner.gnm1.ann1.KD8HWC Arachis hypogaea HOM05D003514 ORTHO05D004280 2.5e-14 82.4 64 62.5
Ca_06387_v3 Cicer arietinum L. HOM05D003514 ORTHO05D004280 2.5e-14 82.4 102 41.2
Ca_29968_v3 Cicer arietinum L. HOM05D003514 ORTHO05D004280 2.5e-14 82.4 102 41.2
Sed0003792 Sechium edule HOM05D003514 ORTHO05D004280 2.5e-14 82.4 95 48.4
TWI38G1202 Tripterygium wilfordii HOM05D003514 ORTHO05D004280 2.5e-14 82.4 68 57.4
arahy.Tifrunner.gnm1.ann1.7DV3CN Arachis hypogaea HOM05D003514 ORTHO05D004280 4.3e-14 81.6 64 62.5
HPP92_012211 Vanilla planifolia HOM05D003514 ORTHO05D004280 5.6e-14 81.3 73 53.4
ECA246G3526 Erigeron canadensis HOM05D003514 ORTHO05D004280 7.4e-14 80.9 71 60.6
Atru.chr2.3670 Acer truncatum HOM05D003514 ORTHO05D004280 9.6e-14 80.5 72 56.9
FAN16G1094 Fragaria x ananassa HOM05D003514 ORTHO05D004280 9.6e-14 80.5 122 41.0
HPP92_012239 Vanilla planifolia HOM05D003514 ORTHO05D004280 9.6e-14 80.5 73 53.4
THA.LOC104822737 Tarenaya hassleriana HOM05D003514 ORTHO05D004280 1.3e-13 80.1 86 53.5
COL.COLO4_09811 Corchorus olitorius HOM05D002577 ORTHO05D004280 1.6e-13 79.7 68 52.9
CiPaw.11G202500 Carya illinoinensis HOM05D003514 ORTHO05D004280 2.1e-13 79.3 70 50.0
ATR0051G023 Amborella trichopoda HOM05D003514 ORTHO05D004280 3.7e-13 78.6 68 55.9
CANSAT11G1118 Cannabis sativa HOM05D003514 ORTHO05D004280 3.7e-13 78.6 130 42.3
Duzib170G0246 Durio zibethinus HOM05D003514 ORTHO05D004280 4.8e-13 78.2 96 42.7
RcHm_v2.0_Chr5g0053871 Rosa chinensis HOM05D003514 ORTHO05D004280 6.2e-13 77.8 68 55.9
Psat2g008080 Pisum sativum HOM05D003514 ORTHO05D004280 8.1e-13 77.4 114 49.1
Duzib213G0424 Durio zibethinus HOM05D003514 ORTHO05D004280 1.1e-12 77.0 69 55.1
PSO541G3361 Papaver somniferum HOM05D003514 ORTHO05D004280 1.1e-12 77.0 70 54.3
THA.LOC104810288 Tarenaya hassleriana HOM05D003514 ORTHO05D004280 1.4e-12 76.6 73 53.4
VMungo0647G0006 Vigna mungo HOM05D003514 ORTHO05D004280 1.8e-12 76.3 111 45.0
TWI39G0456 Tripterygium wilfordii HOM05D003514 ORTHO05D004280 4.0e-12 75.1 70 48.6
SEGI_40461 Sequoiadendron giganteum HOM05D003514 ORTHO05D004280 5.3e-12 74.7 68 51.5
Gohir.D08G035300 Gossypium hirsutum HOM05D003514 ORTHO05D004280 6.9e-12 74.3 68 51.5
Gorai.004G033300 Gossypium raimondii HOM05D003514 ORTHO05D004280 6.9e-12 74.3 68 51.5
Sc17g0004670 Simmondsia chinensis HOM05D003514 ORTHO05D004280 9.0e-12 73.9 71 52.1
Thecc.07G016000 Theobroma cacao HOM05D003514 ORTHO05D004280 9.0e-12 73.9 68 52.9
ATR0661G012 Amborella trichopoda HOM05D003514 ORTHO05D004280 1.2e-11 73.6 68 52.9
DCAR_002611 Daucus carota HOM05D003514 ORTHO05D004280 1.2e-11 73.6 63 55.6
Gohir.A01G090500 Gossypium hirsutum HOM05D003514 ORTHO05D004280 1.2e-11 73.6 68 48.5
Gohir.D01G075800 Gossypium hirsutum HOM05D003514 ORTHO05D004280 1.2e-11 73.6 68 48.5
Gorai.002G099000 Gossypium raimondii HOM05D003514 ORTHO05D004280 1.5e-11 73.2 68 48.5
AUR62002662 Chenopodium quinoa HOM05D003514 ORTHO05D004280 2.0e-11 72.8 68 52.9
Thhalv10011579m.g Eutrema salsugineum HOM05D003514 ORTHO05D004280 2.0e-11 72.8 72 52.8
Gohir.A04G006600 Gossypium hirsutum HOM05D003514 ORTHO05D004280 2.0e-11 72.8 96 40.6
Sc06g0006950 Simmondsia chinensis HOM05D003514 ORTHO05D004280 2.6e-11 72.4 62 53.2
Gohir.A08G024800 Gossypium hirsutum HOM05D003514 ORTHO05D004280 3.4e-11 72.0 68 48.5
PSO675G3765 Papaver somniferum HOM05D003514 ORTHO05D004280 4.5e-11 71.6 70 51.4
Sp1g41500 Schrenkiella parvula HOM05D003514 ORTHO05D004280 4.5e-11 71.6 72 54.2
Lalb_Chr17g0348911 Lupinus albus HOM05D003514 ORTHO05D004280 5.8e-11 71.2 75 49.3
Hund17717 Selenicereus undatus HOM05D003514 ORTHO05D004280 5.8e-11 71.2 60 58.3
AL1G64040 Arabidopsis lyrata HOM05D003514 ORTHO05D004280 7.6e-11 70.9 76 50.0
Gohir.D05G382400 Gossypium hirsutum HOM05D003514 ORTHO05D004280 7.6e-11 70.9 96 39.6
Gorai.009G449000 Gossypium raimondii HOM05D003514 ORTHO05D004280 7.6e-11 70.9 96 39.6
AT1G55900 Arabidopsis thaliana HOM05D003514 ORTHO05D004280 9.9e-11 70.5 76 50.0
Cpa.g.sc12.165 Carica papaya HOM05D003514 ORTHO05D004280 1.3e-10 70.1 57 57.9
CARHR045610 Cardamine hirsuta HOM05D003514 ORTHO05D004280 1.7e-10 69.7 76 50.0
CSS0016043 Camellia sinensis var. sinensis HOM05D003514 ORTHO05D004280 2.2e-10 69.3 42 78.6
CSS0029193 Camellia sinensis var. sinensis HOM05D003514 ORTHO05D004280 2.2e-10 69.3 42 78.6
unitig_62.g23298 Utricularia gibba HOM05D002577 ORTHO05D002883 2.2e-10 69.3 73 52.1
Carub.0001s4449 Capsella rubella HOM05D003514 ORTHO05D004280 3.8e-10 68.6 76 46.1
vmacro12089 Vaccinium macrocarpon HOM05D003514 ORTHO05D004280 4.9e-10 68.2 57 56.1
AUR62042758 Chenopodium quinoa HOM05D003514 ORTHO05D004280 8.4e-10 67.4 103 41.7
Gohir.A04G006660 Gossypium hirsutum HOM05D003514 ORTHO05D004280 1.1e-09 67.0 97 38.1
Actinidia37160 Actinidia chinensis HOM05D026105 ORTHO05D019463 1.4e-09 66.6 40 77.5
arahy.Tifrunner.gnm1.ann1.0CP2Z1 Arachis hypogaea HOM05D003514 ORTHO05D004280 1.4e-09 66.6 125 38.4
BcaC08g43663 Brassica carinata HOM05D003514 ORTHO05D004280 1.9e-09 66.2 73 49.3
A05p17240 Brassica napus HOM05D003514 ORTHO05D004280 3.2e-09 65.5 101 42.6
BcaB02g10791 Brassica carinata HOM05D003514 ORTHO05D004280 4.2e-09 65.1 89 42.7
Zm00001eb353050 Zea mays HOM05D003514 ORTHO05D004280 4.2e-09 65.1 65 44.6
AUR62029099 Chenopodium quinoa HOM05D003514 ORTHO05D004280 5.5e-09 64.7 65 47.7
Haze_09807 Corylus avellana HOM05D003514 ORTHO05D004280 7.1e-09 64.3 73 42.5
EL10Ac3g06160 Beta vulgaris HOM05D003514 ORTHO05D004280 9.3e-09 63.9 65 52.3
BraA05t20623Z Brassica rapa HOM05D003514 ORTHO05D004280 9.3e-09 63.9 101 41.6
BcaC08g44227 Brassica carinata HOM05D003514 ORTHO05D004280 1.2e-08 63.5 100 43.0
C03p93290 Brassica napus HOM05D003514 ORTHO05D004280 1.2e-08 63.5 74 45.9
DCAR_030352 Daucus carota HOM05D003514 ORTHO05D004280 1.2e-08 63.5 63 49.2
Aqoxy4G02253 Aquilegia oxysepala HOM05D003514 ORTHO05D004280 1.6e-08 63.2 66 48.5
A08p00210 Brassica napus HOM05D003514 ORTHO05D004280 1.6e-08 63.2 74 45.9
BolC3t21627H Brassica oleracea HOM05D003514 ORTHO05D004280 1.6e-08 63.2 74 45.9
BraA08t32078Z Brassica rapa HOM05D003514 ORTHO05D004280 1.6e-08 63.2 74 45.9
Cfa020209 Carpinus fangiana HOM05D003514 ORTHO05D004280 2.7e-08 62.4 73 42.5
Aa31LG10G280 Aethionema arabicum HOM05D003514 ORTHO05D004280 3.5e-08 62.0 60 53.3
Gorai.009G449200 Gossypium raimondii HOM05D003514 ORTHO05D004280 3.5e-08 62.0 96 37.5
BolC6t36829H Brassica oleracea HOM05D003514 ORTHO05D004280 4.6e-08 61.6 100 42.0
Zm00001eb370440 Zea mays HOM05D003514 ORTHO05D004280 4.6e-08 61.6 67 41.8
C06p16290 Brassica napus HOM05D003514 ORTHO05D004280 1.0e-07 60.5 101 40.6
THA.LOC104815699 Tarenaya hassleriana HOM05D003514 ORTHO05D004280 1.0e-07 60.5 71 46.5
Aa31LG10G12280 Aethionema arabicum HOM05D003514 ORTHO05D004280 1.8e-07 59.7 62 51.6
Os05g0513200 Oryza sativa ssp. japonica HOM05D003514 ORTHO05D004280 1.8e-07 59.7 69 42.0
Cpa.g.sc12.168 Carica papaya HOM05D003514 ORTHO05D004280 2.3e-07 59.3 58 48.3
Gohir.D05G381960 Gossypium hirsutum HOM05D003514 ORTHO05D004280 2.3e-07 59.3 89 40.4
Cpa.g.sc12.167 Carica papaya HOM05D003514 ORTHO05D004280 5.1e-07 58.2 52 51.9
TAR629G1666 Trochodendron aralioides HOM05D003514 ORTHO05D004280 5.1e-07 58.2 40 70.0
Os01g0762400 Oryza sativa ssp. japonica HOM05D003514 ORTHO05D004280 1.1e-06 57.0 67 38.8
EL10Ac9g22687 Beta vulgaris HOM05D003514 ORTHO05D004280 1.9e-06 56.2 65 44.6
Dinv10323 Davidia involucrata HOM05D003514 ORTHO05D004280 9.6e-06 53.9 33 75.8


User provided reference genes

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