Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.8e-198 694.9 417 100.0
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 5.7e-178 627.9 417 91.6
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 5.3e-176 621.3 418 85.4
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-152 543.9 444 73.9
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.1e-152 542.0 439 72.7
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.2e-148 528.1 423 69.0
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.2e-143 513.8 439 69.2
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.1e-139 500.7 424 67.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 3.0e-134 482.6 443 71.8
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.3e-125 452.6 430 60.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.6e-124 450.3 443 62.8
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.6e-122 443.0 427 62.5
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.7e-121 440.3 440 60.0
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.0e-118 431.0 459 59.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.7e-118 430.3 427 63.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 2.5e-117 426.4 451 57.2
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.6e-116 422.5 440 57.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.1e-115 421.0 437 60.6
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 6.9e-115 418.3 432 63.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.5e-114 417.2 457 55.4
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 1.5e-114 417.2 444 64.6
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.3e-113 414.1 431 62.9
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.7e-113 413.7 439 62.4
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.2e-112 409.5 457 55.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 3.2e-112 409.5 453 58.7
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.1e-111 406.8 444 59.2
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.5e-111 406.0 438 55.5
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.6e-111 405.6 442 61.8
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 7.9e-111 404.8 454 61.7
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.0e-110 404.4 467 53.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.0e-110 404.4 445 63.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.8e-110 403.7 456 53.9
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.9e-110 402.5 487 52.2
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 5.1e-110 402.1 442 60.9
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 6.7e-110 401.7 435 60.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 8.7e-110 401.4 454 59.7
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.7e-110 401.4 442 62.9
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.5e-109 400.6 434 56.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 9.6e-109 397.9 434 57.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.8e-108 396.4 478 59.0
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 8.1e-108 394.8 434 55.3
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-107 394.0 436 58.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.4e-107 393.3 478 59.2
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.0e-107 391.3 459 52.7
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.6e-106 389.8 493 59.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 4.5e-106 389.0 483 59.0
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 4.5e-106 389.0 466 57.1
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.8e-106 388.7 478 57.5
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 5.8e-106 388.7 468 56.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.6e-106 388.3 426 56.1
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 9.9e-106 387.9 481 57.0
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 9.9e-106 387.9 459 52.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.9e-105 386.3 439 57.6
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 8.4e-105 384.8 424 55.2
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 8.4e-105 384.8 459 56.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-104 384.4 459 52.3
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.9e-104 383.6 426 56.3
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.9e-104 383.6 474 58.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.9e-104 383.6 478 57.5
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.4e-104 383.3 445 58.4
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 4.2e-104 382.5 469 52.7
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 5.5e-104 382.1 425 61.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.6e-103 380.6 443 58.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.7e-103 379.8 478 57.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 6.0e-103 378.6 458 55.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 7.9e-103 378.3 469 52.0
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.0e-102 377.9 479 56.6
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 2.3e-102 376.7 481 58.0
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 2.3e-102 376.7 435 58.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 3.0e-102 376.3 450 54.0
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-100 370.9 458 58.1
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.1e-100 370.2 458 58.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.1e-100 370.2 504 55.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.8e-100 369.8 428 55.4
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.8e-100 369.8 429 55.5
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 3.7e-100 369.4 513 50.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.8e-100 369.0 445 57.8
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.4e-99 366.7 407 57.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.1e-99 366.3 417 54.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 6.9e-99 365.2 439 55.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.5e-98 364.0 440 60.2
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.6e-98 363.2 451 58.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.6e-98 363.2 487 55.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 3.4e-98 362.8 471 49.5
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 6.5e-97 358.6 502 54.6
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.4e-96 357.5 465 55.1
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.9e-94 349.4 455 56.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.1e-92 343.6 455 53.2
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.1e-92 343.6 454 51.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.3e-92 342.0 422 53.3
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.4e-91 340.9 454 56.8
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.2e-90 337.8 424 53.3
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.3e-89 334.3 453 49.7
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.2e-89 333.6 488 56.8
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.5e-89 331.6 424 52.8
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.9e-88 330.5 407 62.2
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 9.3e-88 328.2 444 48.6
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.1e-87 325.5 418 55.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 6.1e-87 325.5 441 52.4
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 2.3e-86 323.6 509 54.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.0e-86 323.2 428 51.9
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 9.7e-85 318.2 502 47.4
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.2e-84 317.0 433 54.0
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 6.3e-84 315.5 194 82.5
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.1e-83 314.7 441 50.1
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.9e-83 312.0 385 49.9
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 6.5e-81 305.4 408 49.3
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.4e-80 304.3 403 50.1
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.1e-79 300.4 461 55.5
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 4.6e-79 299.3 443 54.4
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 5.1e-78 295.8 171 84.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.7e-76 290.8 174 83.3
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.4e-74 283.1 501 44.7
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.3e-73 281.2 424 46.9
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.1e-72 278.1 218 65.6
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-72 277.3 192 75.0
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 7.2e-72 275.4 463 44.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.0e-65 255.0 452 45.6
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.2e-65 253.8 384 47.9
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 2.7e-58 230.3 334 47.3
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.2e-56 223.4 128 83.6
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 4.0e-54 216.5 360 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 6.3e-52 209.1 377 43.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 2.9e-49 200.3 485 35.7
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.9e-48 197.6 282 51.1
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-47 194.9 172 62.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 3.3e-40 170.2 400 39.8
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.8e-38 164.5 164 51.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 8.3e-36 155.6 207 44.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.2e-29 135.2 213 39.0
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.7e-26 124.0 316 33.5
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.7e-26 124.0 386 32.4
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.0e-25 122.1 87 73.6
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.3e-24 116.7 165 47.3
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 5.6e-24 116.3 65 86.2
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.9e-20 104.0 97 58.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.3e-16 90.1 52 84.6
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-15 88.2 101 49.5
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 3.6e-15 87.0 124 43.5
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.6e-15 87.0 233 32.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.7e-15 86.7 49 83.7
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 6.4e-12 76.3 73 57.5
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.2e-10 72.0 389 33.9
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.2e-10 72.0 389 33.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 8.7e-09 65.9 64 59.4
CiPaw.13G170400 Carya illinoinensis HOM05D000230 ORTHO05D000176 8.1e-07 59.3 141 29.1
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 1.8e-06 58.2 126 31.7
Actinidia06625 Actinidia chinensis HOM05D000230 ORTHO05D000176 3.1e-06 57.4 126 32.5
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
Os06g0182300 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 5.2e-06 56.6 126 32.5
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.2e-06 56.6 122 26.2
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 6.9e-06 56.2 119 29.4
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.9e-06 56.2 119 29.4
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.9e-06 56.2 119 29.4
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 6.9e-06 56.2 122 26.2
TWI79G1186 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 6.9e-06 56.2 126 31.7
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 9.0e-06 55.8 122 26.2
Eucgr.I00208 Eucalyptus grandis HOM05D000230 ORTHO05D000176 9.0e-06 55.8 159 28.9
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 9.0e-06 55.8 40 72.5


User provided reference genes

Program Settings