Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 4.2e-59 231.5 146 100.0
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.1e-58 229.2 146 98.6
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.1e-56 223.4 146 96.6
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.6e-48 193.7 146 85.6
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.4e-46 189.9 146 86.3
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.0e-46 188.3 146 84.2
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 6.9e-46 187.6 143 85.3
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 2.0e-45 186.0 145 84.8
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.2e-43 178.7 146 79.5
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.5e-43 177.9 146 79.5
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 9.7e-40 167.2 139 55.4
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 9.0e-38 160.6 145 75.2
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.7e-36 156.4 139 77.0
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 3.8e-36 155.2 142 69.7
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 5.0e-36 154.8 129 77.5
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.5e-35 152.5 138 70.3
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.2e-35 152.1 137 74.5
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.2e-35 152.1 137 74.5
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 4.2e-35 151.8 129 76.7
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 7.2e-35 151.0 138 69.6
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.1e-34 149.4 137 73.0
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.7e-34 149.1 129 75.2
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 3.6e-34 148.7 128 73.4
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.6e-34 148.7 139 70.5
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 4.6e-34 148.3 129 65.9
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 6.1e-34 147.9 137 72.3
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 7.9e-34 147.5 129 74.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.8e-33 146.4 130 73.1
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.8e-33 146.4 129 76.0
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 5.1e-33 144.8 138 63.8
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 6.7e-33 144.4 128 74.2
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 8.8e-33 144.1 131 74.0
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.5e-32 143.3 136 72.1
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.5e-32 143.3 88 72.7
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-32 143.3 137 70.8
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.9e-32 142.9 142 70.4
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 2.5e-32 142.5 134 72.4
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 4.3e-32 141.7 129 71.3
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 4.3e-32 141.7 134 71.6
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 5.7e-32 141.4 132 68.9
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 5.7e-32 141.4 129 72.1
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 9.7e-32 140.6 138 69.6
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-31 140.2 135 70.4
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-31 140.2 135 70.4
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 2.2e-31 139.4 137 71.5
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 2.2e-31 139.4 134 72.4
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 3.7e-31 138.7 140 67.9
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.1e-30 137.1 139 64.7
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.4e-30 136.7 129 69.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.4e-30 136.0 134 70.9
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 2.4e-30 136.0 129 68.2
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 5.3e-30 134.8 137 68.6
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 9.1e-30 134.0 129 72.1
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 9.1e-30 134.0 129 54.3
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 1.2e-29 133.7 129 68.2
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.2e-29 133.7 129 66.7
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.5e-29 133.3 134 69.4
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.5e-29 133.3 131 67.9
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.0e-29 132.9 139 67.6
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.0e-29 132.9 134 59.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 7.7e-29 131.0 144 65.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.3e-28 130.2 119 76.5
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.7e-28 129.8 122 72.1
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.2e-28 129.4 140 53.6
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 3.8e-28 128.6 123 72.4
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 6.5e-28 127.9 132 68.9
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.5e-27 125.9 139 62.6
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.5e-27 125.9 125 48.8
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.5e-27 125.9 133 63.9
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 4.2e-27 125.2 119 74.8
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 4.2e-27 125.2 131 65.6
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 5.5e-27 124.8 131 64.1
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 7.2e-27 124.4 125 68.0
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 9.4e-27 124.0 83 65.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 2.7e-26 122.5 129 63.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.7e-26 121.7 126 65.1
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.7e-26 121.7 126 65.1
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 6.1e-26 121.3 131 63.4
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 6.1e-26 121.3 137 61.3
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 7.9e-26 120.9 127 70.1
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 1.4e-25 120.2 126 65.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 1.4e-25 120.2 126 65.1
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.8e-25 119.8 118 73.7
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 3.9e-25 118.6 139 59.7
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 8.8e-25 117.5 126 62.7
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.1e-24 117.1 80 58.8
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.0e-24 116.3 135 60.0
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 2.0e-24 116.3 129 61.2
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 7.4e-24 114.4 80 56.2
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 3.7e-23 112.1 140 52.9
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 6.3e-23 111.3 112 72.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.4e-22 110.2 131 58.0
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.4e-22 110.2 131 58.0
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.8e-22 109.8 129 58.9
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.8e-22 109.8 141 55.3
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 2.4e-22 109.4 131 57.3
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.5e-21 106.7 82 51.2
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 3.4e-21 105.5 134 41.0
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.5e-21 105.1 116 47.4
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 5.9e-21 104.8 131 57.3
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.3e-20 103.6 137 55.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.9e-20 102.4 142 39.4
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.9e-20 102.4 136 61.0
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 5.0e-20 101.7 100 78.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 6.5e-20 101.3 119 58.0
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 1.4e-19 100.1 121 57.0
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.6e-18 96.7 131 54.2
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.7e-18 95.9 141 53.2
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.7e-18 95.9 141 53.2
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 3.9e-17 92.0 120 53.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 5.2e-17 91.7 116 58.6
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.5e-16 90.1 131 53.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 3.3e-16 89.0 133 42.9
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 9.7e-16 87.4 95 64.2
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.3e-12 77.0 120 34.2
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.3e-12 77.0 120 34.2
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.7e-12 76.6 119 34.5
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.7e-12 76.6 119 34.5
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.7e-12 76.6 119 34.5
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 3.8e-12 75.5 63 50.8
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 8.5e-12 74.3 122 32.0
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 1.1e-11 73.9 93 40.9
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.5e-11 73.6 136 47.1
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 2.1e-10 69.7 118 32.2
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.4e-08 62.0 58 44.8
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.4e-08 62.0 87 54.0
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 1.7e-07 60.1 96 31.2
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 2.8e-07 59.3 80 30.0


User provided reference genes

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