Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 8.9e-202 706.8 383 100.0
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 6.0e-198 694.1 383 98.2
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 4.7e-179 631.3 367 94.0
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 6.6e-165 584.3 369 87.0
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.1e-162 577.0 350 90.0
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 5.3e-130 468.4 315 79.7
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 7.7e-129 464.5 328 79.0
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.7e-128 463.4 368 70.7
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.2e-128 463.0 337 74.5
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 8.5e-128 461.1 316 78.8
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 1.4e-127 460.3 322 76.4
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 7.2e-127 458.0 371 70.6
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 7.9e-126 454.5 296 81.8
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.4e-125 453.8 346 73.1
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 2.3e-125 453.0 367 72.2
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 5.1e-125 451.8 282 89.0
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 5.1e-125 451.8 345 73.6
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 5.1e-125 451.8 354 71.8
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.1e-124 450.7 350 72.9
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.1e-124 450.7 289 82.7
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.5e-124 450.3 287 82.2
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.0e-124 449.9 293 82.9
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 2.0e-124 449.9 318 77.4
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.6e-124 449.5 297 81.5
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.3e-124 449.1 350 72.6
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 7.4e-124 448.0 351 73.8
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 9.7e-124 447.6 325 75.4
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.3e-123 447.2 288 82.6
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.3e-123 447.2 291 81.8
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 4.8e-123 445.3 355 70.1
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 8.2e-123 444.5 354 70.3
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.1e-122 444.1 343 71.7
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.1e-122 444.1 343 71.7
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 1.4e-122 443.7 297 81.1
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 1.8e-122 443.4 316 77.8
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 3.1e-122 442.6 369 67.8
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 5.3e-122 441.8 298 80.5
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.6e-121 440.3 302 83.4
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.6e-121 440.3 266 86.8
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.6e-121 440.3 318 76.1
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 2.0e-121 439.9 283 83.7
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 2.6e-121 439.5 342 74.0
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.6e-121 439.5 293 80.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 5.9e-121 438.3 264 86.7
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 3.8e-120 435.6 285 82.5
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.9e-119 433.3 300 80.7
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 2.5e-119 433.0 300 79.7
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 3.2e-119 432.6 334 72.8
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.2e-119 432.6 263 86.3
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 1.6e-118 430.3 267 84.3
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 2.1e-118 429.9 295 79.0
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 2.1e-118 429.9 289 81.7
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 2.7e-118 429.5 377 67.6
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 2.7e-118 429.5 288 80.9
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 2.7e-118 429.5 292 78.8
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 3.6e-118 429.1 342 71.9
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.7e-118 428.7 371 69.0
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.0e-117 427.6 332 72.9
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.4e-117 427.2 273 83.2
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.8e-117 426.8 314 77.1
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 1.8e-117 426.8 262 85.1
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.8e-117 426.8 338 72.8
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 2.3e-117 426.4 355 68.5
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 3.0e-117 426.0 333 72.4
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 3.0e-117 426.0 322 73.3
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 4.0e-117 425.6 286 81.1
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 5.2e-117 425.2 333 72.1
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 8.8e-117 424.5 320 75.6
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.1e-116 424.1 343 71.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.0e-116 423.3 302 78.1
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.6e-116 422.9 348 70.4
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.6e-116 422.9 312 75.6
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.3e-116 422.5 273 82.1
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 3.3e-116 422.5 297 77.1
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 5.7e-116 421.8 289 79.2
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 7.5e-116 421.4 267 85.4
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 9.7e-116 421.0 302 77.5
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.8e-115 418.7 288 79.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.1e-114 417.5 311 74.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.3e-114 415.2 285 79.6
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 7.0e-114 414.8 350 69.1
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 9.1e-114 414.5 283 79.9
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.5e-113 412.1 275 82.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.5e-111 407.1 405 59.3
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.7e-110 402.9 392 63.5
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.4e-108 396.0 286 75.5
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 4.1e-106 389.0 347 65.4
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 3.5e-105 386.0 261 79.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 2.9e-104 382.9 318 70.4
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 8.5e-104 381.3 243 83.1
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.5e-103 380.6 306 69.9
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.2e-102 377.5 249 79.9
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 2.6e-100 369.8 248 80.2
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.3e-99 367.5 248 77.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 2.4e-98 363.2 263 73.8
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.1e-98 362.5 324 66.0
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.0e-97 360.1 253 77.5
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.0e-97 360.1 356 62.4
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 2.7e-97 359.8 345 63.2
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.0e-96 357.8 372 59.9
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.3e-96 356.7 359 61.6
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.1e-95 354.4 322 65.8
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.6e-92 343.2 218 85.3
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.2e-91 340.1 253 71.1
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-86 323.6 195 86.2
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.5e-84 317.4 229 76.9
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.5e-79 300.8 216 75.9
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.6e-78 297.4 260 62.3
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 4.6e-73 279.3 271 61.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.1e-72 275.8 247 65.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 7.6e-68 261.9 260 56.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 8.4e-67 258.5 256 57.8
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.8e-61 240.7 293 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.2e-60 238.0 270 55.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 9.9e-60 235.0 230 64.3
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 7.3e-55 218.8 230 62.2
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 9.0e-53 211.8 170 72.9
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.5e-47 193.7 140 78.6
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 9.9e-44 181.8 135 76.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-38 164.1 98 86.7
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.2e-36 158.3 142 67.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 4.5e-36 156.4 204 54.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 9.3e-34 148.7 93 82.8
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.5e-31 140.6 157 54.8
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 7.4e-31 139.0 157 54.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.9e-26 124.4 113 63.7
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.4e-20 103.6 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.4e-18 98.2 95 66.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 4.6e-17 93.2 60 88.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.5e-12 78.2 240 32.1
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.2e-10 70.5 41 95.1


User provided reference genes

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