Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 3.0e-268 927.9 467 100.0
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.3e-258 896.0 467 96.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 1.1e-257 892.9 453 99.3
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.2e-231 805.4 467 86.5
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.5e-227 792.7 467 86.3
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 3.3e-227 791.6 451 87.6
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.9e-214 749.2 437 87.0
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 4.9e-178 628.2 453 70.2
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 8.6e-175 617.5 444 69.4
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.9e-174 616.3 444 69.1
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.4e-172 609.4 473 65.3
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.1e-169 600.5 460 65.9
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 4.2e-169 598.6 452 67.0
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 5.4e-169 598.2 330 90.0
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 1.6e-168 596.7 465 64.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 6.0e-168 594.7 464 64.0
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.0e-167 594.0 459 65.6
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.5e-166 590.1 429 68.3
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 1.3e-165 587.0 465 64.5
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 4.8e-165 585.1 396 74.2
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 1.1e-164 583.9 463 61.8
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 9.0e-164 580.9 464 63.4
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 3.4e-163 578.9 464 62.9
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 4.4e-163 578.6 463 64.1
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.4e-163 578.6 464 62.9
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 7.6e-163 577.8 465 62.4
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 9.9e-163 577.4 463 64.6
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 2.9e-162 575.9 451 64.7
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 2.9e-162 575.9 449 63.9
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 4.6e-160 568.5 432 66.0
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.5e-158 563.5 461 64.6
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.9e-158 563.1 449 63.3
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 3.3e-158 562.4 465 60.6
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 5.6e-158 561.6 450 64.0
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 9.6e-158 560.8 465 61.9
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 2.1e-157 559.7 444 63.1
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 3.6e-157 558.9 439 63.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 1.1e-156 557.4 451 62.7
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.4e-156 557.0 445 62.9
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 3.1e-156 555.8 465 59.8
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.3e-156 555.1 437 62.7
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.2e-155 553.9 445 62.5
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 2.6e-155 552.7 457 61.1
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 2.2e-154 549.7 437 62.9
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.8e-154 548.9 459 62.1
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 6.4e-154 548.1 463 61.1
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 8.4e-154 547.7 457 61.3
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 5.4e-153 545.0 463 59.8
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 7.1e-153 544.7 457 60.8
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 7.1e-153 544.7 438 61.6
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 1.6e-152 543.5 465 58.9
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.6e-152 542.0 439 62.4
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 7.9e-152 541.2 471 60.1
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.0e-151 540.8 448 62.3
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.5e-150 537.0 409 64.8
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 4.3e-150 535.4 446 61.0
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 5.6e-150 535.0 451 59.4
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.3e-149 533.9 446 62.1
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.1e-148 530.8 434 60.8
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 1.8e-148 530.0 473 57.5
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 3.1e-148 529.3 435 60.0
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 3.1e-148 529.3 466 58.2
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 5.3e-148 528.5 461 60.1
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 1.2e-147 527.3 399 66.7
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 1.3e-146 523.9 461 58.1
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 5.5e-145 518.5 439 59.9
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 3.5e-144 515.8 440 60.9
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 3.9e-143 512.3 439 59.9
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.5e-142 510.4 438 59.4
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.5e-142 510.4 451 58.5
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 4.3e-142 508.8 451 58.8
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 9.6e-142 507.7 451 58.5
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.6e-141 506.9 438 59.6
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 2.8e-141 506.1 453 58.5
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.3e-140 501.9 472 57.2
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 3.8e-138 495.7 480 55.0
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.5e-137 493.0 446 57.2
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 7.1e-137 491.5 498 53.0
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.3e-135 486.5 449 59.7
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 1.8e-132 476.9 432 54.6
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 2.5e-126 456.4 445 55.1
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 7.4e-126 454.9 443 53.7
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 6.9e-124 448.4 442 51.6
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.2e-123 447.6 748 39.0
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.7e-122 443.7 359 61.8
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 8.8e-119 431.4 442 50.0
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 3.8e-114 416.0 455 47.7
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 5.0e-114 415.6 408 56.1
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 3.0e-111 406.4 332 61.4
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.3e-109 401.0 334 60.5
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 5.0e-106 389.0 312 62.8
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 1.1e-105 387.9 306 61.1
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 9.4e-105 384.8 368 48.9
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 1.0e-103 381.3 452 48.9
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 5.2e-103 379.0 324 62.3
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 8.8e-103 378.3 308 61.7
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 3.4e-102 376.3 365 51.2
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.3e-93 347.8 409 46.5
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.6e-91 340.9 306 56.9
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 2.9e-90 336.7 310 56.8
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.5e-89 331.6 400 48.5
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.3e-87 327.0 238 65.5
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.2e-78 298.1 351 48.1
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.7e-69 266.5 244 56.6
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.4e-68 264.6 445 39.8
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 4.6e-67 259.6 216 61.1
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.9e-66 256.5 216 60.2
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 2.9e-61 240.4 226 53.5
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 1.1e-57 228.4 212 60.4
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 8.9e-55 218.8 146 68.5
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.5e-46 191.4 147 66.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.9e-45 187.2 133 68.4
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 2.7e-43 180.6 231 43.3
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.3e-42 177.6 173 53.2
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 2.0e-38 164.5 141 63.1
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.1e-36 158.7 138 61.6
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.8e-31 141.4 107 65.4
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 6.9e-31 139.4 134 56.7
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 3.3e-25 120.6 112 50.0
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 4.8e-24 116.7 411 25.1
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.8e-23 114.8 409 26.2
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.9e-20 104.8 76 68.4
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 6.7e-18 96.3 127 47.2
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 6.9e-15 86.3 389 22.9
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 5.9e-14 83.2 58 74.1
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 9.1e-07 59.3 46 56.5


User provided reference genes

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