Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.9e-222 773.9 379 100.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.6e-203 712.6 352 98.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.0e-197 693.3 356 95.2
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.6e-195 684.9 351 93.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.1e-191 671.4 353 92.4
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.5e-185 652.9 351 90.9
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-182 642.9 333 93.7
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-162 576.2 351 80.3
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.9e-160 568.9 350 78.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.3e-160 567.4 351 78.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-156 556.6 350 78.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.9e-156 556.2 350 76.9
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.3e-156 554.3 347 77.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.5e-156 553.9 347 78.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 6.2e-155 551.2 351 76.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.1e-155 550.8 348 77.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.1e-154 550.4 347 77.5
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.4e-154 550.1 345 77.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.3e-154 549.3 351 77.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.3e-154 549.3 377 73.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.1e-154 548.9 351 76.6
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.1e-154 548.9 351 76.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.1e-154 548.9 351 75.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.0e-154 548.5 351 76.1
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.2e-154 548.1 347 76.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.5e-153 546.6 349 76.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 8.3e-152 540.8 345 77.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.4e-151 539.3 345 76.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.4e-151 539.3 345 77.1
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.2e-151 538.9 345 76.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.2e-151 538.9 345 75.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 5.4e-151 538.1 351 74.6
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 7.1e-151 537.7 348 75.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 9.2e-151 537.3 351 75.5
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.2e-151 537.3 352 75.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.2e-151 537.3 346 76.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.6e-150 536.6 362 74.6
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 3.5e-150 535.4 351 73.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 5.1e-149 531.6 350 76.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.9e-148 529.6 354 73.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.6e-148 528.1 351 73.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.2e-147 526.9 350 74.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.1e-146 522.3 354 73.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 4.0e-146 521.9 323 78.6
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 5.2e-146 521.5 347 72.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.8e-146 521.2 357 73.4
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 6.8e-146 521.2 353 72.8
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-145 520.0 349 73.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.0e-145 519.6 347 72.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.4e-145 518.8 350 72.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 9.9e-145 517.3 332 76.5
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.7e-144 516.5 365 71.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.8e-144 515.4 350 72.3
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 6.4e-144 514.6 353 72.8
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.4e-143 512.7 355 72.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.2e-143 512.3 357 73.1
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.2e-142 510.4 355 71.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.6e-142 510.0 331 74.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.3e-141 506.9 350 72.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.0e-141 505.8 332 74.4
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.9e-141 505.4 352 72.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.6e-141 504.6 324 76.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 6.6e-141 504.6 358 70.7
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.9e-140 503.1 355 70.7
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.8e-139 499.2 352 71.3
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.0e-138 495.4 347 71.2
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 5.2e-138 495.0 351 71.5
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.9e-138 494.6 347 70.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 9.0e-138 494.2 353 70.5
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.2e-137 493.8 356 69.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.5e-137 493.4 377 67.4
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.0e-137 493.0 332 73.5
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.0e-137 493.0 349 71.6
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.6e-137 492.7 330 75.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.3e-136 490.3 330 73.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-136 490.0 323 74.9
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 8.4e-136 487.6 301 79.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.1e-135 487.3 326 72.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.9e-135 486.5 328 73.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.4e-135 486.1 347 69.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.4e-135 485.0 405 63.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 9.3e-135 484.2 345 71.3
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.7e-134 482.6 347 69.2
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.9e-133 478.8 372 65.6
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.1e-133 478.4 324 72.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.5e-132 476.9 321 72.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.6e-132 474.9 351 70.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.8e-131 471.9 326 69.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-131 471.9 353 66.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.8e-131 471.9 349 69.3
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.1e-131 471.1 325 71.7
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.8e-130 469.9 331 71.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-130 469.9 333 71.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 6.9e-130 468.0 344 66.0
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 6.9e-130 468.0 339 69.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.0e-129 466.5 340 70.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.4e-129 465.7 327 70.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 9.9e-129 464.2 328 70.1
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 9.9e-129 464.2 320 70.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.3e-128 463.8 369 65.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.2e-128 463.0 320 70.6
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.9e-128 462.6 351 66.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.9e-128 462.6 330 69.7
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-128 462.2 350 66.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.8e-128 462.2 328 69.2
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 4.9e-128 461.8 330 68.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.9e-128 461.8 345 68.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.1e-127 460.7 321 70.4
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-127 460.7 345 67.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.4e-127 460.3 330 69.4
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 5.4e-127 458.4 342 66.7
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 7.1e-127 458.0 351 65.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 9.3e-127 457.6 351 65.8
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-126 456.8 313 72.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.5e-126 455.7 327 70.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.6e-126 455.3 373 63.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 4.3e-124 448.7 353 63.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.3e-124 448.7 350 66.3
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 4.8e-123 445.3 325 69.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.2e-123 444.9 305 72.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.1e-123 444.5 315 70.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 5.3e-122 441.8 263 81.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 7.6e-121 438.0 326 66.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 9.9e-121 437.6 333 65.2
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.2e-120 436.4 278 77.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.6e-118 430.3 355 63.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.5e-116 423.7 532 46.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.2e-113 414.1 350 61.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.9e-112 408.7 264 77.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.1e-110 403.3 289 73.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 7.9e-102 374.8 352 58.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.3e-100 369.0 228 78.5
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.3e-99 367.5 336 56.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.7e-99 367.1 345 53.9
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.7e-91 340.5 295 58.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-89 334.3 280 62.5
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.4e-89 332.8 242 66.5
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.2e-85 318.9 206 77.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-83 314.3 267 61.8
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.8e-83 312.4 233 69.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 7.0e-82 308.5 201 75.6
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 9.7e-76 288.1 259 59.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.2e-73 281.2 189 75.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 8.5e-72 275.0 163 82.2
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.5e-63 247.7 375 40.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.0e-60 237.3 188 63.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.7e-60 235.7 160 71.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 3.7e-59 233.0 212 57.5
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.1e-58 229.9 163 69.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 4.5e-57 226.1 190 65.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.6e-52 210.3 147 70.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.2e-51 207.2 273 45.4
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 3.9e-48 196.4 328 40.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.4e-44 183.3 192 52.1
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.4e-37 161.4 109 71.6
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.9e-26 124.4 274 34.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.9e-26 124.4 344 33.4
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.9e-26 124.4 73 83.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.4e-26 124.0 157 45.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.0e-25 119.4 266 35.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.3e-23 112.5 127 48.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 5.8e-20 102.8 60 73.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.2e-18 97.1 57 71.9
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.2e-18 96.7 57 80.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.5e-17 93.6 60 75.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 6.6e-16 89.4 115 42.6
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.5e-12 76.6 137 38.7
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 6.0e-09 66.2 49 63.3


User provided reference genes

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