Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g042770.1 Solanum lycopersicum HOM05D000070 ORTHO05D030927 4.8e-35 150.6 75 100.0
Sopen07g022430 Solanum pennellii HOM05D000070 ORTHO05D030927 2.0e-33 145.2 74 95.9
Sopen06g034050 Solanum pennellii HOM05D000070 ORTHO05D003837 2.6e-28 128.3 68 95.6
Solyc06g082630.4 Solanum lycopersicum HOM05D000070 ORTHO05D003837 3.3e-28 127.9 68 94.1
Solyc06g082660.4 Solanum lycopersicum HOM05D000070 ORTHO05D003837 5.7e-28 127.1 68 94.1
PGSC0003DMG400030476 Solanum tuberosum HOM05D000070 ORTHO05D003837 1.3e-27 125.9 68 92.6
Sopen06g034030 Solanum pennellii HOM05D000070 ORTHO05D003837 3.1e-26 121.3 64 93.8
CAN.G874.66 Capsicum annuum HOM05D000070 ORTHO05D003837 4.7e-22 107.5 68 80.9
Nitab4.5_0002902g0100 Nicotiana tabacum HOM05D000070 ORTHO05D003837 1.4e-21 105.9 68 82.4
PGSC0003DMG400020570 Solanum tuberosum HOM05D000070 ORTHO05D003837 1.5e-20 102.4 68 82.4
Nitab4.5_0000105g0310 Nicotiana tabacum HOM05D000070 ORTHO05D003837 1.3e-19 99.4 68 77.9
Nitab4.5_0000586g0050 Nicotiana tabacum HOM05D000070 ORTHO05D003837 2.2e-19 98.6 68 75.0
Nitab4.5_0003194g0060 Nicotiana tabacum HOM05D000070 ORTHO05D003837 1.1e-18 96.3 68 77.9
Nitab4.5_0003941g0030 Nicotiana tabacum HOM05D000070 ORTHO05D003837 5.3e-18 94.0 69 76.8
Nitab4.5_0005087g0030 Nicotiana tabacum HOM05D000070 ORTHO05D003837 9.1e-18 93.2 68 72.1
Peaxi162Scf00737g00411 Petunia axillaris HOM05D000070 ORTHO05D003837 2.6e-17 91.7 68 70.6
Peaxi162Scf00131g00122 Petunia axillaris HOM05D000070 ORTHO05D003837 1.3e-16 89.4 68 73.5
Cfa011847 Carpinus fangiana HOM05D000070 ORTHO05D003837 1.5e-15 85.9 71 67.6
Haze_24483 Corylus avellana HOM05D000070 ORTHO05D003837 1.5e-15 85.9 71 67.6
FAN01G2652 Fragaria x ananassa HOM05D000070 ORTHO05D003837 1.5e-15 85.9 70 67.1
FAN10G0861 Fragaria x ananassa HOM05D000070 ORTHO05D003837 1.5e-15 85.9 70 67.1
CiPaw.13G062200 Carya illinoinensis HOM05D000070 ORTHO05D003837 7.2e-15 83.6 70 65.7
QL01p024313 Quercus lobata HOM05D000070 ORTHO05D003837 7.2e-15 83.6 70 64.3
Atru.chr10.2348 Acer truncatum HOM05D000070 ORTHO05D003837 2.1e-14 82.0 71 67.6
RcHm_v2.0_Chr1g0325371 Rosa chinensis HOM05D000070 ORTHO05D003837 2.7e-14 81.6 70 65.7
Actinidia11491 Actinidia chinensis HOM05D000070 ORTHO05D003837 4.7e-14 80.9 71 64.8
Nn5g26803 Nelumbo nucifera HOM05D000070 ORTHO05D003837 4.7e-14 80.9 71 66.2
Cpa.g.sc2.273 Carica papaya HOM05D000070 ORTHO05D003837 6.1e-14 80.5 71 64.8
Sed0002106 Sechium edule HOM05D000070 ORTHO05D003837 6.1e-14 80.5 70 67.1
MSTRG.21263 Avicennia marina HOM05D000070 ORTHO05D003837 8.0e-14 80.1 72 65.3
HanXRQChr08g0230211 Helianthus annuus HOM05D000070 ORTHO05D003837 8.0e-14 80.1 67 62.7
AUR62033142 Chenopodium quinoa HOM05D000070 ORTHO05D003837 1.0e-13 79.7 67 64.2
Migut.D00810 Erythranthe guttata HOM05D000070 ORTHO05D003837 1.0e-13 79.7 68 66.2
RcHm_v2.0_Chr5g0073581 Rosa chinensis HOM05D000070 ORTHO05D003837 1.0e-13 79.7 70 62.9
FAN16G0778 Fragaria x ananassa HOM05D000070 ORTHO05D003837 1.4e-13 79.3 71 62.0
Thecc.10G111300 Theobroma cacao HOM05D000070 ORTHO05D003837 1.4e-13 79.3 70 67.1
Duzib128G1258 Durio zibethinus HOM05D000070 ORTHO05D003837 1.8e-13 79.0 70 67.1
Gorai.013G011900 Gossypium raimondii HOM05D000070 ORTHO05D003837 1.8e-13 79.0 70 65.7
Gohir.D13G011100 Gossypium hirsutum HOM05D000070 ORTHO05D003837 2.3e-13 78.6 70 65.7
AUR62008629 Chenopodium quinoa HOM05D000070 ORTHO05D003837 3.0e-13 78.2 70 67.1
FvH4_3g40850 Fragaria vesca HOM05D000070 ORTHO05D003837 3.0e-13 78.2 71 62.0
FAN21G0514 Fragaria x ananassa HOM05D000070 ORTHO05D003837 3.0e-13 78.2 71 62.0
MD03G1049000 Malus domestica HOM05D000070 ORTHO05D003837 3.0e-13 78.2 70 62.9
MD11G1051500 Malus domestica HOM05D000070 ORTHO05D003837 3.0e-13 78.2 70 62.9
Phvul.006G080300 Phaseolus vulgaris HOM05D000070 ORTHO05D003837 3.0e-13 78.2 71 66.2
Dinv25361 Davidia involucrata HOM05D000070 ORTHO05D003837 4.0e-13 77.8 66 63.6
CiPaw.14G049200 Carya illinoinensis HOM05D000070 ORTHO05D003837 5.2e-13 77.4 70 60.0
SalBow5G1257 Salvia bowleyana HOM05D000070 ORTHO05D003837 5.2e-13 77.4 68 67.6
Gohir.A13G010200 Gossypium hirsutum HOM05D000070 ORTHO05D003837 6.8e-13 77.0 70 62.9
Sed0003519 Sechium edule HOM05D000070 ORTHO05D003837 6.8e-13 77.0 69 63.8
SGA_v2.0_scaffold120G32999 Striga asiatica HOM05D000070 ORTHO05D003837 6.8e-13 77.0 68 67.6
TAR633G0181 Trochodendron aralioides HOM05D000070 ORTHO05D003837 6.8e-13 77.0 73 64.4
Thecc.10G111600 Theobroma cacao HOM05D000070 ORTHO05D003837 1.2e-12 76.3 70 64.3
FAN11G1333 Fragaria x ananassa HOM05D000070 ORTHO05D003837 1.5e-12 75.9 71 60.6
Gohir.D09G166600 Gossypium hirsutum HOM05D000070 ORTHO05D003837 2.0e-12 75.5 71 63.4
Gorai.006G188400 Gossypium raimondii HOM05D000070 ORTHO05D003837 2.0e-12 75.5 71 63.4
Glyma.18G050900 Glycine max HOM05D000070 ORTHO05D003837 3.4e-12 74.7 73 63.0
Oeu026937.1 Olea europaea HOM05D000070 ORTHO05D003837 3.4e-12 74.7 68 61.8
VMungo0540G2104 Vigna mungo HOM05D000070 ORTHO05D003837 3.4e-12 74.7 68 66.2
Actinidia20802 Actinidia chinensis HOM05D000070 ORTHO05D003837 4.4e-12 74.3 66 63.6
Actinidia28544 Actinidia chinensis HOM05D000070 ORTHO05D003837 4.4e-12 74.3 66 63.6
Ah.08g213050 Amaranthus hybridus HOM05D000070 ORTHO05D003837 4.4e-12 74.3 70 57.1
Nn2g10243 Nelumbo nucifera HOM05D000070 ORTHO05D003837 4.4e-12 74.3 72 62.5
Hund18154 Selenicereus undatus HOM05D000070 ORTHO05D003837 4.4e-12 74.3 67 62.7
ClCG02G019000 Citrullus lanatus HOM05D000070 ORTHO05D003837 5.7e-12 73.9 69 63.8
MELO3C019587.2 Cucumis melo HOM05D000070 ORTHO05D003837 5.7e-12 73.9 69 63.8
CsaV3_6G013170 Cucumis sativus L. HOM05D000070 ORTHO05D003837 5.7e-12 73.9 69 63.8
Psat5g146000 Pisum sativum HOM05D000070 ORTHO05D003837 5.7e-12 73.9 71 63.4
TAR636G2320 Trochodendron aralioides HOM05D000070 ORTHO05D003837 5.7e-12 73.9 67 65.7
vmacro02865 Vaccinium macrocarpon HOM05D000070 ORTHO05D003837 5.7e-12 73.9 67 64.2
A02p07840 Brassica napus HOM05D000070 ORTHO05D003837 7.5e-12 73.6 67 65.7
BraA02t05857Z Brassica rapa HOM05D000070 ORTHO05D003837 7.5e-12 73.6 67 65.7
COL.COLO4_25839 Corchorus olitorius HOM05D000070 ORTHO05D003837 7.5e-12 73.6 70 61.4
ECA247G1326 Erigeron canadensis HOM05D000033 ORTHO05D003837 7.5e-12 73.6 67 61.2
HPP92_019754 Vanilla planifolia HOM05D000070 ORTHO05D003837 7.5e-12 73.6 72 63.9
BcaB05g22417 Brassica carinata HOM05D000070 ORTHO05D003837 9.7e-12 73.2 67 65.7
BcaC03g14109 Brassica carinata HOM05D000070 ORTHO05D003837 9.7e-12 73.2 67 65.7
C02p13480 Brassica napus HOM05D000070 ORTHO05D003837 9.7e-12 73.2 67 65.7
BolC2t07460H Brassica oleracea HOM05D000070 ORTHO05D003837 9.7e-12 73.2 67 65.7
HPP92_019047 Vanilla planifolia HOM05D000070 ORTHO05D003837 9.7e-12 73.2 72 63.9
MBI15_g32282_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D003837 1.3e-11 72.8 66 62.1
MD05G1031100 Malus domestica HOM05D000070 ORTHO05D003837 1.3e-11 72.8 68 63.2
Potri.006G029100 Populus trichocarpa HOM05D000070 ORTHO05D026333 1.3e-11 72.8 65 61.5
TPR.G13897 Trifolium pratense HOM05D000070 ORTHO05D003837 1.3e-11 72.8 69 60.9
arahy.Tifrunner.gnm1.ann1.4J21RI Arachis hypogaea HOM05D000070 ORTHO05D003837 1.7e-11 72.4 73 58.9
arahy.Tifrunner.gnm1.ann1.SFIU4Y Arachis hypogaea HOM05D000070 ORTHO05D003837 1.7e-11 72.4 73 58.9
FvH4_7g03250 Fragaria vesca HOM05D000070 ORTHO05D003837 1.7e-11 72.4 58 63.8
Sc21g0004830 Simmondsia chinensis HOM05D000070 ORTHO05D003837 1.7e-11 72.4 66 59.1
MSTRG.18535 Avicennia marina HOM05D000070 ORTHO05D003837 2.2e-11 72.0 68 61.8
Oeu022883.1 Olea europaea HOM05D000070 ORTHO05D003837 2.2e-11 72.0 68 66.2
Sp6g19940 Schrenkiella parvula HOM05D000070 ORTHO05D003837 2.2e-11 72.0 67 64.2
Thhalv10013708m.g Eutrema salsugineum HOM05D000070 ORTHO05D003837 2.8e-11 71.6 67 64.2
SalBow2G3044 Salvia bowleyana HOM05D000070 ORTHO05D003837 2.8e-11 71.6 67 64.2
CSS0043566 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D003837 3.7e-11 71.2 72 59.7
Glyma.11G199900 Glycine max HOM05D000070 ORTHO05D003837 3.7e-11 71.2 75 60.0
Glyma.11G200000 Glycine max HOM05D000070 ORTHO05D003837 3.7e-11 71.2 66 63.6
Lalb_Chr17g0345661 Lupinus albus HOM05D000070 ORTHO05D003837 4.8e-11 70.9 70 58.6
Sabra06G0020800 Salix brachista HOM05D000070 ORTHO05D003837 4.8e-11 70.9 68 63.2
C03p14470 Brassica napus HOM05D000033 ORTHO05D000913 6.3e-11 70.5 67 64.2
BraA03t10544Z Brassica rapa HOM05D000070 ORTHO05D003837 6.3e-11 70.5 67 64.2
CANSAT54G1601 Cannabis sativa HOM05D000070 ORTHO05D003837 6.3e-11 70.5 69 58.0
Duzib114G0918 Durio zibethinus HOM05D000070 ORTHO05D003837 6.3e-11 70.5 70 62.9
Hma1.2p1_0174F.1_g076720 Hydrangea macrophylla HOM05D000070 ORTHO05D003837 6.3e-11 70.5 67 61.2
Psat2g090520 Pisum sativum HOM05D000070 ORTHO05D003837 6.3e-11 70.5 72 61.1
Psat4g121600 Pisum sativum HOM05D000070 ORTHO05D003837 6.3e-11 70.5 72 61.1
Actinidia23155 Actinidia chinensis HOM05D000070 ORTHO05D003837 8.3e-11 70.1 67 64.2
BcaB01g04534 Brassica carinata HOM05D000033 ORTHO05D000913 8.3e-11 70.1 67 64.2
A03p12320 Brassica napus HOM05D000033 ORTHO05D000913 8.3e-11 70.1 67 64.2
BolC3t13889H Brassica oleracea HOM05D000070 ORTHO05D003837 8.3e-11 70.1 67 64.2
Lj6g0020148 Lotus japonicus HOM05D000070 ORTHO05D003837 8.3e-11 70.1 70 60.0
Aqoxy4G03298 Aquilegia oxysepala HOM05D000070 ORTHO05D003837 1.4e-10 69.3 72 54.2
Potri.006G031000 Populus trichocarpa HOM05D000070 ORTHO05D003837 1.4e-10 69.3 65 58.5
TWI31G0366 Tripterygium wilfordii HOM05D000070 ORTHO05D003837 1.4e-10 69.3 69 59.4
Dinv16950 Davidia involucrata HOM05D000070 ORTHO05D003837 1.8e-10 68.9 71 57.7
Gohir.A09G170901 Gossypium hirsutum HOM05D000070 ORTHO05D003837 1.8e-10 68.9 71 59.2
vmacro08953 Vaccinium macrocarpon HOM05D000070 ORTHO05D003837 3.1e-10 68.2 68 60.3
AL8G34390 Arabidopsis lyrata HOM05D000070 ORTHO05D003837 4.1e-10 67.8 65 63.1
AT5G58290 Arabidopsis thaliana HOM05D000070 ORTHO05D003837 4.1e-10 67.8 65 63.1
C09p50190 Brassica napus HOM05D000070 ORTHO05D003837 4.1e-10 67.8 67 62.7
BolC9t57875H Brassica oleracea HOM05D000070 ORTHO05D003837 4.1e-10 67.8 67 62.7
BraA10t43630Z Brassica rapa HOM05D000070 ORTHO05D003837 4.1e-10 67.8 67 62.7
Carub.0008s1883 Capsella rubella HOM05D000070 ORTHO05D003837 4.1e-10 67.8 65 63.1
Oeu030101.1 Olea europaea HOM05D000070 ORTHO05D003837 4.1e-10 67.8 65 60.0
Aa31LG11G70 Aethionema arabicum HOM05D000070 ORTHO05D003837 5.3e-10 67.4 66 62.1
BcaB01g04533 Brassica carinata HOM05D000033 ORTHO05D000913 5.3e-10 67.4 67 59.7
Rhsim13G0058000 Rhododendron simsii HOM05D000070 ORTHO05D003837 5.3e-10 67.4 70 58.6
A10p15940 Brassica napus HOM05D000070 ORTHO05D003837 9.1e-10 66.6 67 61.2
PSO832G0732 Papaver somniferum HOM05D000070 ORTHO05D003837 9.1e-10 66.6 67 56.7
ATR1127G188 Amborella trichopoda HOM05D000070 ORTHO05D003837 1.2e-09 66.2 74 54.1
TPR.G23888 Trifolium pratense HOM05D000070 ORTHO05D003837 1.2e-09 66.2 68 55.9
Lalb_Chr18g0054101 Lupinus albus HOM05D000070 ORTHO05D003837 1.6e-09 65.9 66 54.5
Ah.15g093230 Amaranthus hybridus HOM05D000070 ORTHO05D003837 2.0e-09 65.5 75 54.7
CARHR272100 Cardamine hirsuta HOM05D000070 ORTHO05D003837 2.7e-09 65.1 65 61.5
FAN03G1913 Fragaria x ananassa HOM05D000070 ORTHO05D003837 2.7e-09 65.1 57 63.2
Lalb_Chr10g0103861 Lupinus albus HOM05D000070 ORTHO05D003837 2.7e-09 65.1 68 55.9
BcaB08g36168 Brassica carinata HOM05D000070 ORTHO05D003837 3.5e-09 64.7 63 63.5
CDE04G3635 Ceratophyllum demersum HOM05D000070 ORTHO05D003837 5.9e-09 63.9 70 54.3
EL10Ac7g17466 Beta vulgaris HOM05D000070 ORTHO05D003837 7.7e-09 63.5 72 52.8
BcaC04g19879 Brassica carinata HOM05D000070 ORTHO05D003837 1.7e-08 62.4 63 61.9
Potri.006G028200 Populus trichocarpa HOM05D000070 ORTHO05D026333 1.7e-08 62.4 65 55.4
Lj4g0016772 Lotus japonicus HOM05D000070 ORTHO05D003837 2.2e-08 62.0 69 53.6
TAR636G1869 Trochodendron aralioides HOM05D000070 ORTHO05D003837 2.2e-08 62.0 53 66.0
Actinidia38683 Actinidia chinensis HOM05D000070 ORTHO05D030927 2.9e-08 61.6 61 59.0
TAR369G0965 Trochodendron aralioides HOM05D000070 ORTHO05D003837 2.9e-08 61.6 67 53.7
THA.LOC104814926 Tarenaya hassleriana HOM05D000070 ORTHO05D003837 6.5e-08 60.5 35 85.7
CANSAT54G1201 Cannabis sativa HOM05D000070 ORTHO05D003837 3.2e-07 58.2 57 56.1
Zm00001eb181160 Zea mays HOM05D000070 ORTHO05D003837 3.2e-07 58.2 35 80.0
Zm00001eb236650 Zea mays HOM05D000070 ORTHO05D003837 4.2e-07 57.8 35 80.0
Os02g0325100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D003837 5.5e-07 57.4 33 81.8
AagrBONN_evm.TU.Sc2ySwM_368.214 Anthoceros agrestis HOM05D000070 ORTHO05D003837 7.2e-07 57.0 38 71.1
Manes.08G161520 Manihot esculenta HOM05D000070 ORTHO05D003837 9.4e-07 56.6 57 59.6
SGA_v2.0_scaffold77G25347 Striga asiatica HOM05D000070 ORTHO05D003837 1.2e-06 56.2 67 53.7
Manes.09G000500 Manihot esculenta HOM05D000070 ORTHO05D003837 1.6e-06 55.8 57 57.9
MCO05G594 Micromonas commoda HOM05D000070 ORTHO05D003837 1.6e-06 55.8 42 71.4
ECA236G0481 Erigeron canadensis HOM05D000070 ORTHO05D003837 2.1e-06 55.5 66 50.0
Thhalv10027786m.g Eutrema salsugineum HOM05D000070 ORTHO05D003837 2.1e-06 55.5 67 52.2
Pp3c14_12590 Physcomitrium patens HOM05D000070 ORTHO05D003837 2.1e-06 55.5 38 71.1
Pp3c2_1850 Physcomitrium patens HOM05D000070 ORTHO05D003837 2.1e-06 55.5 38 71.1
PRCOL_00001451 Prasinoderma coloniale HOM05D000070 ORTHO05D003837 2.7e-06 55.1 67 49.3
Pp3c1_38560 Physcomitrium patens HOM05D000070 ORTHO05D003837 4.7e-06 54.3 35 74.3


User provided reference genes

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