Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 1.0e-171 606.7 314 100.0
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 3.2e-165 585.1 314 97.1
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 6.2e-153 544.3 314 92.4
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 9.0e-144 513.8 314 86.3
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.4e-139 500.0 314 83.8
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 2.8e-137 492.3 313 82.7
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 3.9e-131 471.9 323 79.3
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 2.9e-97 359.4 318 62.6
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 2.0e-95 353.2 330 60.6
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 2.7e-95 352.8 325 60.6
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 1.6e-92 343.6 324 57.7
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 4.7e-92 342.0 329 60.2
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 1.8e-91 340.1 322 60.6
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 2.3e-91 339.7 331 60.1
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 3.1e-91 339.3 320 59.1
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 4.0e-91 339.0 329 57.4
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 1.2e-90 337.4 319 57.7
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 9.8e-90 334.3 327 56.3
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 3.7e-89 332.4 330 59.1
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 3.7e-89 332.4 327 56.0
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 6.4e-89 331.6 328 56.1
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 1.1e-88 330.9 325 57.2
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.9e-88 330.1 321 56.7
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 7.0e-88 328.2 321 56.4
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 2.0e-87 326.6 313 56.9
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.3e-86 323.9 321 55.8
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 5.0e-86 322.0 328 57.3
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 6.6e-86 321.6 327 54.4
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 8.6e-86 321.2 324 56.5
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 2.5e-85 319.7 329 56.5
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 5.6e-85 318.5 328 54.6
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 1.2e-84 317.4 313 55.9
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.1e-84 316.6 321 55.5
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 2.1e-84 316.6 326 56.1
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 6.2e-84 315.1 331 54.7
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 3.1e-83 312.8 325 55.1
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 6.8e-83 311.6 312 56.1
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 8.9e-83 311.2 323 55.1
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 2.6e-82 309.7 328 57.6
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 5.8e-82 308.5 322 55.3
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 5.8e-82 308.5 324 55.9
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 1.3e-81 307.4 323 53.6
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 3.7e-81 305.8 328 55.2
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 6.4e-81 305.1 325 54.2
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 1.4e-80 303.9 327 55.0
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 5.4e-80 302.0 319 55.5
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.7e-79 299.7 331 54.7
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.7e-79 299.7 331 54.7
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 4.6e-79 298.9 323 53.6
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 7.8e-79 298.1 323 52.9
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 1.0e-78 297.7 326 54.9
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 1.0e-78 297.7 328 51.8
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 1.0e-78 297.7 324 54.0
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 1.7e-78 297.0 320 52.8
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 1.1e-77 294.3 320 52.5
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 1.5e-77 293.9 323 52.9
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 2.5e-77 293.1 317 53.9
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 3.3e-77 292.7 326 53.7
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 3.3e-77 292.7 319 55.5
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.3e-77 292.7 319 55.5
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 7.3e-77 291.6 329 53.8
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 7.3e-77 291.6 307 55.0
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 9.5e-77 291.2 319 55.2
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.8e-76 289.7 319 55.2
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 1.4e-75 287.3 370 50.0
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 2.3e-75 286.6 324 54.3
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 4.0e-75 285.8 313 50.8
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 5.2e-75 285.4 332 51.5
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 5.2e-75 285.4 311 51.8
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.2e-74 284.3 331 53.8
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 1.2e-74 284.3 329 51.4
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.5e-74 283.9 331 53.5
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 2.0e-74 283.5 319 53.0
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 2.0e-74 283.5 336 53.0
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 7.6e-74 281.6 314 51.0
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 1.7e-73 280.4 311 51.8
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 4.9e-73 278.9 312 51.6
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 8.4e-73 278.1 321 52.0
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 3.2e-72 276.2 313 51.1
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 6.0e-71 271.9 322 50.9
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 7.8e-71 271.6 311 51.1
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.3e-70 270.8 319 50.5
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 5.1e-70 268.9 311 51.4
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 1.1e-69 267.7 407 43.7
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 2.5e-69 266.5 312 50.3
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.6e-68 263.8 326 48.5
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 3.6e-68 262.7 312 50.6
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 3.6e-68 262.7 312 50.6
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 3.6e-68 262.7 314 50.0
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 4.0e-67 259.2 312 50.3
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 4.9e-65 252.3 322 50.6
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 1.9e-64 250.4 273 52.7
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.4e-64 250.0 311 47.6
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 2.4e-64 250.0 327 48.6
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 3.2e-64 249.6 329 49.8
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 9.3e-64 248.1 320 47.2
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.7e-62 243.8 308 46.4
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 1.7e-62 243.8 299 50.8
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 8.7e-62 241.5 155 74.2
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 4.0e-59 232.6 323 44.9
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 6.9e-59 231.9 322 44.7
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 1.4e-56 224.2 317 42.9
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 4.6e-55 219.2 330 44.5
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 5.6e-45 185.7 320 41.2
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 2.0e-42 177.2 291 39.9
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 2.6e-42 176.8 178 54.5
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 4.5e-42 176.0 314 41.4
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.1e-40 171.4 317 36.3
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 5.1e-38 162.5 188 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 2.5e-37 160.2 245 40.0
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 1.5e-34 151.0 342 34.5
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.4e-32 144.4 142 52.1
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 1.4e-32 144.4 262 42.4
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 6.1e-31 139.0 139 50.4
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 1.5e-29 134.4 343 33.5
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 6.9e-27 125.6 128 45.3
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 1.2e-23 114.8 129 54.3
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 4.6e-23 112.8 138 42.0
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 1.1e-19 101.7 151 43.0
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 9.1e-19 98.6 57 70.2
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 2.6e-18 97.1 57 68.4
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 5.5e-16 89.4 235 32.8
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.8e-14 84.3 235 32.3
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 6.5e-09 65.9 42 73.8
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 4.7e-07 59.7 122 36.9
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 8.0e-07 58.9 116 37.9


User provided reference genes

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