Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g039260.2 Solanum lycopersicum HOM05D000513 ORTHO05D390603 1.1e-65 253.1 117 100.0
Solyc10g046840.1 Solanum lycopersicum HOM05D000513 ORTHO05D390120 3.2e-46 188.3 117 78.6
Solyc07g025180.2 Solanum lycopersicum HOM05D000513 ORTHO05D391786 9.5e-38 160.2 92 81.5
PGSC0003DMG400001328 Solanum tuberosum HOM05D000513 ORTHO05D005338 2.8e-21 105.5 70 72.9
Solyc02g088000.3 Solanum lycopersicum HOM05D000513 ORTHO05D005338 8.0e-21 104.0 70 71.4
Sopen02g032740 Solanum pennellii HOM05D000513 ORTHO05D005338 8.0e-21 104.0 70 71.4
Solyc03g059290.1 Solanum lycopersicum HOM05D000513 ORTHO05D392344 2.0e-19 99.4 55 80.0
SalBow1G3534 Salvia bowleyana HOM05D000513 ORTHO05D005338 2.6e-19 99.0 70 67.1
SalBow1G6141 Salvia bowleyana HOM05D000513 ORTHO05D005338 2.6e-19 99.0 70 67.1
Nn3g17255 Nelumbo nucifera HOM05D000513 ORTHO05D005338 4.4e-19 98.2 70 67.1
Peaxi162Scf00129g00129 Petunia axillaris HOM05D000513 ORTHO05D005338 4.4e-19 98.2 70 67.1
Manes.02G046733 Manihot esculenta HOM05D000513 ORTHO05D005338 5.8e-19 97.8 70 68.6
Nitab4.5_0002980g0050 Nicotiana tabacum HOM05D000513 ORTHO05D005338 5.8e-19 97.8 70 67.1
Gohir.D09G014100 Gossypium hirsutum HOM05D000513 ORTHO05D005338 1.7e-18 96.3 82 58.5
Gorai.006G016400 Gossypium raimondii HOM05D000513 ORTHO05D005338 1.7e-18 96.3 82 58.5
Nitab4.5_0000564g0020 Nicotiana tabacum HOM05D000513 ORTHO05D005338 1.7e-18 96.3 70 65.7
GSVIVG01011429001 Vitis vinifera HOM05D000513 ORTHO05D005338 1.7e-18 96.3 70 65.7
PGR004G2567 Punica granatum HOM05D000513 ORTHO05D005338 2.2e-18 95.9 70 64.3
Oeu027855.1 Olea europaea HOM05D000513 ORTHO05D005338 2.9e-18 95.5 70 64.3
Oeu027856.1 Olea europaea HOM05D000513 ORTHO05D005338 2.9e-18 95.5 70 64.3
Atru.chr8.178 Acer truncatum HOM05D000513 ORTHO05D005338 3.7e-18 95.1 70 65.7
Dinv34148 Davidia involucrata HOM05D000513 ORTHO05D005338 3.7e-18 95.1 70 67.1
HanXRQChr09g0265221 Helianthus annuus HOM05D000513 ORTHO05D005338 3.7e-18 95.1 70 64.3
Potri.017G084100 Populus trichocarpa HOM05D000513 ORTHO05D005338 4.9e-18 94.7 70 67.1
Sabra17G0074200 Salix brachista HOM05D000513 ORTHO05D005338 4.9e-18 94.7 70 67.1
ATR0564G338 Amborella trichopoda HOM05D000513 ORTHO05D005338 6.4e-18 94.4 70 62.9
BcaC05g30487 Brassica carinata HOM05D000513 ORTHO05D005338 6.4e-18 94.4 70 64.3
Carub.0003s0097 Capsella rubella HOM05D000513 ORTHO05D005338 6.4e-18 94.4 70 64.3
Thhalv10020091m.g Eutrema salsugineum HOM05D000513 ORTHO05D005338 6.4e-18 94.4 70 64.3
Aa31LG5G12440 Aethionema arabicum HOM05D000513 ORTHO05D005338 1.4e-17 93.2 70 64.3
ECA232G4228 Erigeron canadensis HOM05D000513 ORTHO05D005338 1.4e-17 93.2 70 62.9
AL3G11070 Arabidopsis lyrata HOM05D000513 ORTHO05D005338 1.9e-17 92.8 70 62.9
AT3G01180 Arabidopsis thaliana HOM05D000513 ORTHO05D005338 1.9e-17 92.8 70 62.9
Glyma.19G022900 Glycine max HOM05D000513 ORTHO05D005338 1.9e-17 92.8 70 64.3
BcaC09g47673 Brassica carinata HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
A05p44780 Brassica napus HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
BNapus_Darmor_BZH_scaffold_97p00120 Brassica napus HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
C09p75370 Brassica napus HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
BolC1t05933H Brassica oleracea HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
BolC5t35123H Brassica oleracea HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
BraA05t23179Z Brassica rapa HOM05D000513 ORTHO05D005338 2.4e-17 92.4 70 62.9
Sc10g0003570 Simmondsia chinensis HOM05D000513 ORTHO05D005338 3.2e-17 92.0 70 61.4
CARHR075860 Cardamine hirsuta HOM05D000513 ORTHO05D005338 4.1e-17 91.7 70 62.9
Cfa007563 Carpinus fangiana HOM05D000513 ORTHO05D005338 4.1e-17 91.7 70 62.9
Cfa007565 Carpinus fangiana HOM05D000513 ORTHO05D005338 4.1e-17 91.7 70 62.9
Gorai.009G348800 Gossypium raimondii HOM05D000513 ORTHO05D005338 4.1e-17 91.7 82 56.1
Gohir.A09G015500 Gossypium hirsutum HOM05D000513 ORTHO05D005338 5.4e-17 91.3 82 56.1
Psat1g073520 Pisum sativum HOM05D000513 ORTHO05D005338 5.4e-17 91.3 70 58.6
Sp3g00920 Schrenkiella parvula HOM05D000513 ORTHO05D005338 5.4e-17 91.3 70 62.9
Ciclev10011124m.g Citrus clementina HOM05D000513 ORTHO05D005338 7.0e-17 90.9 82 57.3
Haze_14520 Corylus avellana HOM05D000513 ORTHO05D005338 7.0e-17 90.9 69 63.8
Ah.12g059870 Amaranthus hybridus HOM05D000513 ORTHO05D005338 9.2e-17 90.5 70 60.0
CDE02G4400 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 1.2e-16 90.1 69 62.3
MD09G1052000 Malus domestica HOM05D000513 ORTHO05D005338 1.6e-16 89.7 82 53.7
Phvul.008G036600 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 1.6e-16 89.7 70 60.0
RcHm_v2.0_Chr2g0168331 Rosa chinensis HOM05D000513 ORTHO05D005338 1.6e-16 89.7 82 56.1
CSS0032498 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 2.1e-16 89.4 70 62.9
CSS0035890 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 2.1e-16 89.4 70 62.9
COL.COLO4_08442 Corchorus olitorius HOM05D000513 ORTHO05D005338 2.7e-16 89.0 82 53.7
MBI02_g15396_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 3.5e-16 88.6 69 60.9
DCAR_005562 Daucus carota HOM05D000513 ORTHO05D005338 4.6e-16 88.2 70 57.1
CAN.G206.155 Capsicum annuum HOM05D000513 ORTHO05D005338 6.0e-16 87.8 69 59.4
THA.LOC104822355 Tarenaya hassleriana HOM05D000513 ORTHO05D005338 6.0e-16 87.8 67 61.2
Aqoxy3G03405 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 7.8e-16 87.4 70 61.4
Aqoxy3G03409 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 7.8e-16 87.4 70 61.4
AUR62039808 Chenopodium quinoa HOM05D000513 ORTHO05D005338 7.8e-16 87.4 70 60.0
EL10Ac2g02984 Beta vulgaris HOM05D000513 ORTHO05D005338 2.3e-15 85.9 70 55.7
Os02g0744700 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 2.3e-15 85.9 70 58.6
CDE09G0475 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 3.0e-15 85.5 69 59.4
AUR62034405 Chenopodium quinoa HOM05D000513 ORTHO05D005338 3.0e-15 85.5 70 58.6
HPP92_006026 Vanilla planifolia HOM05D000513 ORTHO05D005338 3.9e-15 85.1 70 57.1
Eucgr.J01349 Eucalyptus grandis HOM05D000513 ORTHO05D005338 5.1e-15 84.7 82 54.9
VMungo1383G0284 Vigna mungo HOM05D000513 ORTHO05D005338 6.6e-15 84.3 70 60.0
Zm00001eb254490 Zea mays HOM05D000513 ORTHO05D005338 8.6e-15 84.0 70 58.6
Ah.10g031590 Amaranthus hybridus HOM05D000513 ORTHO05D005338 1.1e-14 83.6 70 55.7
Zm00001eb222830 Zea mays HOM05D000513 ORTHO05D005338 1.1e-14 83.6 70 54.3
MBI05_g34358_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 1.5e-14 83.2 67 59.7
Zm00001eb194550 Zea mays HOM05D000513 ORTHO05D005338 1.5e-14 83.2 70 58.6
Os10g0437600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 4.3e-14 81.6 70 54.3
SEGI_10180 Sequoiadendron giganteum HOM05D000513 ORTHO05D005338 4.3e-14 81.6 70 55.7
Prupe.3G266700 Prunus persica HOM05D000513 ORTHO05D005338 5.6e-14 81.3 70 58.6
SGA_v2.0_scaffold499G52491 Striga asiatica HOM05D000513 ORTHO05D005338 5.6e-14 81.3 69 56.5
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 7.3e-14 80.9 67 59.7
Os06g0229800 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 1.2e-13 80.1 70 55.7
PSO013G0263 Papaver somniferum HOM05D000513 ORTHO05D005338 1.6e-13 79.7 70 54.3
PSO832G4046 Papaver somniferum HOM05D000513 ORTHO05D005338 1.6e-13 79.7 70 54.3
Lsat_1_v5_gn_2_88360 Lactuca sativa HOM05D000513 ORTHO05D005338 3.6e-13 78.6 67 55.2
Nn5g27400 Nelumbo nucifera HOM05D000513 ORTHO05D009133 3.6e-13 78.6 67 55.2
Manes.01G091700 Manihot esculenta HOM05D000513 ORTHO05D005338 6.2e-13 77.8 70 57.1
Cpa.g.c36490 Carica papaya HOM05D000513 ORTHO05D005338 8.1e-13 77.4 75 53.3
Ca_04285_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 8.1e-13 77.4 70 54.3
Ca_29846_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 8.1e-13 77.4 70 54.3
HanXRQChr14g0449751 Helianthus annuus HOM05D000513 ORTHO05D005338 8.1e-13 77.4 70 52.9
TAR622G0870 Trochodendron aralioides HOM05D000513 ORTHO05D005338 8.1e-13 77.4 70 57.1
arahy.Tifrunner.gnm1.ann1.27CGVJ Arachis hypogaea HOM05D000513 ORTHO05D005338 1.1e-12 77.0 70 54.3
arahy.Tifrunner.gnm1.ann1.9G3TAM Arachis hypogaea HOM05D000513 ORTHO05D005338 1.1e-12 77.0 70 54.3
Lj2g0016593 Lotus japonicus HOM05D000513 ORTHO05D005338 1.1e-12 77.0 70 52.9
TAR374G1602 Trochodendron aralioides HOM05D000513 ORTHO05D005338 1.4e-12 76.6 70 57.1
ECA238G0428 Erigeron canadensis HOM05D000513 ORTHO05D005338 1.8e-12 76.3 70 52.9
FvH4_6g48410 Fragaria vesca HOM05D000513 ORTHO05D005338 3.1e-12 75.5 70 52.9
FAN02G2319 Fragaria x ananassa HOM05D000513 ORTHO05D005338 3.1e-12 75.5 70 52.9
MD00G1130900 Malus domestica HOM05D000513 ORTHO05D005338 4.0e-12 75.1 70 55.7
arahy.Tifrunner.gnm1.ann1.UUZ1A7 Arachis hypogaea HOM05D000513 ORTHO05D005338 5.2e-12 74.7 69 55.1
Medtr6g012380 Medicago truncatula HOM05D000513 ORTHO05D005338 5.2e-12 74.7 70 51.4
Zm00001eb279740 Zea mays HOM05D000513 ORTHO05D005338 5.2e-12 74.7 67 55.2
Duzib147G1357 Durio zibethinus HOM05D000513 ORTHO05D005338 8.9e-12 73.9 82 50.0
Migut.H00928 Erythranthe guttata HOM05D000513 ORTHO05D005338 8.9e-12 73.9 70 54.3
Dinv33768 Davidia involucrata HOM05D000513 ORTHO05D005338 1.2e-11 73.6 70 54.3
Lj4A110T78 Lonicera japonica HOM05D000513 ORTHO05D005338 1.2e-11 73.6 70 51.4
Lalb_Chr21g0318691 Lupinus albus HOM05D000513 ORTHO05D005338 1.2e-11 73.6 70 51.4
MSTRG.3241 Avicennia marina HOM05D000513 ORTHO05D005338 1.5e-11 73.2 70 52.9
Thecc.04G083300 Theobroma cacao HOM05D000513 ORTHO05D005338 1.5e-11 73.2 82 50.0
ClCG10G015190 Citrullus lanatus HOM05D000513 ORTHO05D005338 2.0e-11 72.8 82 50.0
Mapoly0148s0026 Marchantia polymorpha HOM05D000513 ORTHO05D005338 2.6e-11 72.4 67 49.3
CANSAT64G2318 Cannabis sativa HOM05D000513 ORTHO05D005338 3.4e-11 72.0 82 50.0
CDE04G1630 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 3.4e-11 72.0 67 53.7
CsaV3_3G041330 Cucumis sativus L. HOM05D000513 ORTHO05D005338 3.4e-11 72.0 82 48.8
MELO3C009861.2 Cucumis melo HOM05D000513 ORTHO05D005338 4.4e-11 71.6 82 47.6
SEGI_17123 Sequoiadendron giganteum HOM05D000513 ORTHO05D005338 4.4e-11 71.6 69 47.8
TWI32G0103 Tripterygium wilfordii HOM05D000513 ORTHO05D005338 4.4e-11 71.6 70 54.3
CiPaw.03G025800 Carya illinoinensis HOM05D000513 ORTHO05D005338 7.5e-11 70.9 70 50.0
Glyma.13G062700 Glycine max HOM05D000513 ORTHO05D005338 7.5e-11 70.9 70 51.4
Actinidia38766 Actinidia chinensis HOM05D000513 ORTHO05D005338 9.9e-11 70.5 70 51.4
Actinidia38784 Actinidia chinensis HOM05D000513 ORTHO05D005338 9.9e-11 70.5 70 51.4
CiPaw.04G016900 Carya illinoinensis HOM05D000513 ORTHO05D005338 9.9e-11 70.5 70 51.4
FAN09G0920 Fragaria x ananassa HOM05D000513 ORTHO05D005338 9.9e-11 70.5 70 50.0
Glyma.18G260101 Glycine max HOM05D000513 ORTHO05D011790 9.9e-11 70.5 48 68.8
Hund15597 Selenicereus undatus HOM05D000513 ORTHO05D005338 9.9e-11 70.5 70 51.4
Rhsim08G0070300 Rhododendron simsii HOM05D000513 ORTHO05D005338 1.3e-10 70.1 70 54.3
Pp3c21_6820 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.7e-10 69.7 70 47.1
Pp3c21_6821 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.7e-10 69.7 70 47.1
Duzib187G1959 Durio zibethinus HOM05D000513 ORTHO05D005338 2.2e-10 69.3 82 46.3
Gohir.A07G205600 Gossypium hirsutum HOM05D000513 ORTHO05D005338 2.9e-10 68.9 69 52.2
Gohir.D07G211700 Gossypium hirsutum HOM05D000513 ORTHO05D005338 2.9e-10 68.9 69 52.2
Gorai.001G239200 Gossypium raimondii HOM05D000513 ORTHO05D005338 2.9e-10 68.9 69 52.2
Lj1g0028208 Lotus japonicus HOM05D000513 ORTHO05D005338 2.9e-10 68.9 70 51.4
Lalb_Chr02g0159331 Lupinus albus HOM05D000513 ORTHO05D005338 2.9e-10 68.9 67 50.7
Sed0000175 Sechium edule HOM05D000513 ORTHO05D005338 3.7e-10 68.6 56 60.7
Sed0017521 Sechium edule HOM05D000513 ORTHO05D005338 3.7e-10 68.6 56 60.7
VMungo0464G2006 Vigna mungo HOM05D000513 ORTHO05D005338 3.7e-10 68.6 70 48.6
SMO234G0040 Selaginella moellendorffii HOM05D000513 ORTHO05D005338 4.9e-10 68.2 69 44.9
AagrBONN_evm.TU.Sc2ySwM_344.4941 Anthoceros agrestis HOM05D000513 ORTHO05D005338 6.4e-10 67.8 69 46.4
FAN14G5629 Fragaria x ananassa HOM05D000513 ORTHO05D005338 6.4e-10 67.8 70 48.6
CBR_g23365 Chara braunii HOM05D000513 ORTHO05D005338 8.3e-10 67.4 72 44.4
Pp3c19_7710 Physcomitrium patens HOM05D000513 ORTHO05D005338 8.3e-10 67.4 70 45.7
Pp3c19_7712 Physcomitrium patens HOM05D000513 ORTHO05D005338 8.3e-10 67.4 70 45.7
QL02p082359 Quercus lobata HOM05D000513 ORTHO05D005338 8.3e-10 67.4 82 45.1
Pp3c22_6120 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.1e-09 67.0 70 47.1
Cre03.g185250 Chlamydomonas reinhardtii HOM05D000513 ORTHO05D005338 1.4e-09 66.6 67 46.3
Oeu039526.1 Olea europaea HOM05D000513 ORTHO05D005338 1.4e-09 66.6 70 50.0
vmacro18187 Vaccinium macrocarpon HOM05D000513 ORTHO05D005338 1.4e-09 66.6 70 51.4
Cc07_g03430 Coffea canephora HOM05D000513 ORTHO05D005338 1.9e-09 66.2 70 48.6
Phvul.004G029100 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 2.4e-09 65.9 70 48.6
CSS0041358 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 2.7e-08 62.4 70 48.6
Nn1g06414 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.3e-07 60.1 49 57.1
HPP92_006007 Vanilla planifolia HOM05D000513 ORTHO05D005338 1.3e-07 60.1 51 54.9
TPR.G8813 Trifolium pratense HOM05D000513 ORTHO05D005338 2.3e-07 59.3 46 56.5
Nn3g21973 Nelumbo nucifera HOM05D000513 ORTHO05D011790 5.1e-07 58.2 49 55.1
CSS0036692 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 1.1e-06 57.0 68 47.1
CsaV3_3G041360 Cucumis sativus L. HOM05D000513 ORTHO05D011790 5.6e-06 54.7 38 65.8


User provided reference genes

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