Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 3.4e-77 291.6 148 100.0
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 7.7e-53 210.7 120 90.0
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.5e-40 169.9 175 59.4
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 3.3e-35 152.1 105 71.4
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 2.1e-34 149.4 105 72.4
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 2.8e-34 149.1 109 70.6
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 6.1e-34 147.9 113 69.9
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 8.0e-34 147.5 105 72.4
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 8.0e-34 147.5 105 72.4
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 1.0e-33 147.1 108 69.4
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 1.4e-33 146.7 115 67.8
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 1.8e-33 146.4 104 71.2
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 1.8e-33 146.4 104 72.1
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 2.3e-33 146.0 102 73.5
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 2.3e-33 146.0 129 61.2
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 2.3e-33 146.0 105 69.5
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 3.0e-33 145.6 109 69.7
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 3.0e-33 145.6 105 69.5
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 3.0e-33 145.6 162 53.1
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 4.0e-33 145.2 118 66.1
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 4.0e-33 145.2 105 70.5
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 6.8e-33 144.4 105 70.5
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 8.9e-33 144.1 104 70.2
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 1.2e-32 143.7 105 71.4
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 1.5e-32 143.3 105 70.5
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 1.5e-32 143.3 107 69.2
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.0e-32 142.9 162 53.1
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 2.6e-32 142.5 108 68.5
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 2.6e-32 142.5 102 71.6
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 2.6e-32 142.5 102 71.6
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 2.6e-32 142.5 104 70.2
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 3.4e-32 142.1 105 69.5
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 3.4e-32 142.1 104 69.2
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 3.4e-32 142.1 102 71.6
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 4.4e-32 141.7 162 50.6
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 7.5e-32 141.0 166 53.6
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 9.8e-32 140.6 162 51.2
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 1.3e-31 140.2 161 54.0
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 1.7e-31 139.8 123 61.0
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 1.7e-31 139.8 109 65.1
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.7e-31 139.8 105 67.6
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 1.7e-31 139.8 105 67.6
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 2.2e-31 139.4 116 66.4
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 2.2e-31 139.4 104 70.2
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 2.9e-31 139.0 107 66.4
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.9e-31 139.0 162 51.9
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 4.9e-31 138.3 105 64.8
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 4.9e-31 138.3 107 68.2
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 4.9e-31 138.3 107 68.2
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 1.1e-30 137.1 102 67.6
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 1.1e-30 137.1 108 67.6
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 1.1e-30 137.1 164 51.2
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 1.1e-30 137.1 105 63.8
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 1.4e-30 136.7 152 53.3
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 1.4e-30 136.7 109 65.1
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 1.4e-30 136.7 102 68.6
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.4e-30 136.7 105 67.6
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 1.4e-30 136.7 102 68.6
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 1.9e-30 136.3 102 68.6
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 2.4e-30 136.0 162 51.2
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 3.2e-30 135.6 102 68.6
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 3.2e-30 135.6 105 67.6
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 3.2e-30 135.6 102 68.6
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 4.1e-30 135.2 105 66.7
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 5.4e-30 134.8 104 66.3
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 7.0e-30 134.4 109 65.1
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 7.0e-30 134.4 102 67.6
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 1.2e-29 133.7 141 55.3
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 1.6e-29 133.3 105 65.7
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 2.0e-29 132.9 114 62.3
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 2.0e-29 132.9 105 66.7
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 7.8e-29 131.0 105 66.7
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 1.7e-28 129.8 105 64.8
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 1.7e-28 129.8 105 64.8
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 1.7e-28 129.8 105 63.8
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 2.3e-28 129.4 105 63.8
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 2.3e-28 129.4 114 59.6
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 1.1e-27 127.1 101 65.3
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 9.5e-27 124.0 110 56.4
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 6.2e-26 121.3 105 59.0
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 8.0e-26 120.9 105 59.0
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 8.0e-26 120.9 108 58.3
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 1.1e-25 120.6 109 57.8
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 1.2e-24 117.1 98 62.2
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 3.4e-24 115.5 83 71.1
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 9.8e-24 114.0 105 62.9
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 1.7e-23 113.2 83 68.7
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 2.9e-23 112.5 83 66.3
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 4.9e-23 111.7 83 67.5
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 9.2e-22 107.5 83 62.7
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 2.7e-21 105.9 118 46.6
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 3.5e-21 105.5 83 65.1
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 4.6e-21 105.1 83 61.4
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 6.0e-21 104.8 94 59.6
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 6.0e-21 104.8 94 59.6
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 7.8e-21 104.4 84 65.5
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 1.0e-20 104.0 85 63.5
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 1.7e-20 103.2 84 65.5
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 2.3e-20 102.8 91 60.4
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 3.9e-20 102.1 116 53.4
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 6.6e-20 101.3 83 62.7
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 1.9e-19 99.8 83 62.7
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 3.3e-19 99.0 88 56.8
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 4.3e-19 98.6 113 48.7
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 4.3e-19 98.6 110 47.3
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 9.9e-16 87.4 72 59.7
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 1.2e-13 80.5 98 41.8
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 2.3e-12 76.3 100 41.0
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 1.9e-11 73.2 92 43.5
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 4.7e-10 68.6 105 37.1
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 8.1e-10 67.8 104 38.5
Thhalv10008519m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 1.5e-08 63.5 134 33.6
ClCG07G001390 Citrullus lanatus HOM05D000117 ORTHO05D000070 9.9e-08 60.8 142 31.0
MELO3C012839.2 Cucumis melo HOM05D000117 ORTHO05D000070 9.9e-08 60.8 120 32.5
A10p02560 Brassica napus HOM05D000117 ORTHO05D000070 1.3e-07 60.5 96 34.4
Peaxi162Scf00043g02713 Petunia axillaris HOM05D000117 ORTHO05D000070 1.3e-07 60.5 140 30.7
Aa31LG1G20740 Aethionema arabicum HOM05D000117 ORTHO05D000070 1.7e-07 60.1 102 34.3
CARHR003440 Cardamine hirsuta HOM05D000117 ORTHO05D000070 1.7e-07 60.1 106 34.0
Phvul.007G189400 Phaseolus vulgaris HOM05D000117 ORTHO05D000070 1.7e-07 60.1 117 29.9
BraA10t42525Z Brassica rapa HOM05D000117 ORTHO05D000070 2.9e-07 59.3 96 34.4
Glyma.13G127000 Glycine max HOM05D000117 ORTHO05D000070 2.9e-07 59.3 117 32.5
MBI03_g18679_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 2.9e-07 59.3 123 33.3
VMungo0720G2537 Vigna mungo HOM05D000117 ORTHO05D000070 2.9e-07 59.3 117 32.5
Psat6g062640 Pisum sativum HOM05D000117 ORTHO05D000070 4.9e-07 58.5 116 33.6
BcaNung04292 Brassica carinata HOM05D000117 ORTHO05D000070 6.4e-07 58.2 153 27.5
BcaNung04694 Brassica carinata HOM05D000117 ORTHO05D000070 6.4e-07 58.2 153 27.5
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 6.4e-07 58.2 105 38.1
Sed0016915 Sechium edule HOM05D000117 ORTHO05D000070 6.4e-07 58.2 123 28.5
TPR.G28140 Trifolium pratense HOM05D000117 ORTHO05D000070 6.4e-07 58.2 168 29.2
C05p02360 Brassica napus HOM05D000117 ORTHO05D000070 8.4e-07 57.8 120 29.2
CsaV3_3G028380 Cucumis sativus L. HOM05D000117 ORTHO05D000070 8.4e-07 57.8 120 31.7
BolC5t29015H Brassica oleracea HOM05D000117 ORTHO05D000070 1.1e-06 57.4 120 29.2
Sp1g02917 Schrenkiella parvula HOM05D000117 ORTHO05D000070 1.1e-06 57.4 134 29.9
Atru.chr2.829 Acer truncatum HOM05D000117 ORTHO05D000070 1.4e-06 57.0 109 36.7
BcaC05g24471 Brassica carinata HOM05D000117 ORTHO05D000070 1.4e-06 57.0 93 33.3
Glyma.10G040400 Glycine max HOM05D000117 ORTHO05D000070 1.4e-06 57.0 117 32.5
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 1.4e-06 57.0 106 34.0
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 1.9e-06 56.6 99 36.4
Cc01_g17790 Coffea canephora HOM05D000117 ORTHO05D000070 1.9e-06 56.6 115 29.6
Lj5g0014958 Lotus japonicus HOM05D000117 ORTHO05D000070 1.9e-06 56.6 116 31.9
Sed0010170 Sechium edule HOM05D000117 ORTHO05D000070 1.9e-06 56.6 124 27.4
Medtr7g096090 Medicago truncatula HOM05D000117 ORTHO05D000070 2.4e-06 56.2 115 34.8
CAN.G536.15 Capsicum annuum HOM05D000117 ORTHO05D000070 3.2e-06 55.8 101 32.7
Ciclev10002290m.g Citrus clementina HOM05D000117 ORTHO05D000070 3.2e-06 55.8 111 35.1
Ciclev10021493m.g Citrus clementina HOM05D000117 ORTHO05D000070 3.2e-06 55.8 122 33.6
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 3.2e-06 55.8 79 43.0
THA.LOC104826053 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 3.2e-06 55.8 128 31.2
HanXRQChr04g0107611 Helianthus annuus HOM05D000117 ORTHO05D000070 4.2e-06 55.5 126 32.5
Lalb_Chr06g0162661 Lupinus albus HOM05D000117 ORTHO05D000070 4.2e-06 55.5 117 33.3
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 4.2e-06 55.5 79 43.0
Manes.03G158300 Manihot esculenta HOM05D000117 ORTHO05D000070 5.4e-06 55.1 96 34.4
PGR031G0139 Punica granatum HOM05D000117 ORTHO05D000070 5.4e-06 55.1 103 30.1
PGR031G2925 Punica granatum HOM05D000117 ORTHO05D000070 5.4e-06 55.1 107 29.9
Solyc12g096980.3 Solanum lycopersicum HOM05D000117 ORTHO05D000070 5.4e-06 55.1 98 31.6
PGSC0003DMG400008586 Solanum tuberosum HOM05D000117 ORTHO05D000070 5.4e-06 55.1 101 32.7
CAN.G566.13 Capsicum annuum HOM05D000117 ORTHO05D000070 7.1e-06 54.7 132 28.0
Cfa004918 Carpinus fangiana HOM05D000117 ORTHO05D000070 7.1e-06 54.7 119 31.9
Ciclev10005544m.g Citrus clementina HOM05D000117 ORTHO05D000070 7.1e-06 54.7 95 34.7
DCAR_012591 Daucus carota HOM05D000117 ORTHO05D000070 7.1e-06 54.7 99 36.4
Glyma.03G167400 Glycine max HOM05D000117 ORTHO05D000070 7.1e-06 54.7 101 32.7
HanXRQChr06g0172571 Helianthus annuus HOM05D000117 ORTHO05D000070 7.1e-06 54.7 125 29.6
Medtr1g069495 Medicago truncatula HOM05D000117 ORTHO05D000070 7.1e-06 54.7 116 30.2
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 7.1e-06 54.7 93 34.4
SalBow4G2820 Salvia bowleyana HOM05D000117 ORTHO05D000070 7.1e-06 54.7 95 35.8
SEGI_11286 Sequoiadendron giganteum HOM05D000117 ORTHO05D000070 7.1e-06 54.7 110 31.8
Solyc03g120390.3 Solanum lycopersicum HOM05D000117 ORTHO05D000070 7.1e-06 54.7 93 35.5
PGSC0003DMG402002635 Solanum tuberosum HOM05D000117 ORTHO05D000070 7.1e-06 54.7 93 35.5
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 7.1e-06 54.7 109 31.2
TWI73G0908 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 7.1e-06 54.7 113 31.9
Carub.0001s0325 Capsella rubella HOM05D000117 ORTHO05D000070 9.2e-06 54.3 123 30.1
Lalb_Chr17g0344681 Lupinus albus HOM05D000117 ORTHO05D000070 9.2e-06 54.3 95 33.7
Manes.01G201600 Manihot esculenta HOM05D000117 ORTHO05D000070 9.2e-06 54.3 113 31.9
SalBow4G2556 Salvia bowleyana HOM05D000117 ORTHO05D000070 9.2e-06 54.3 95 35.8
unitig_85.g27209 Utricularia gibba HOM05D000117 ORTHO05D000070 9.2e-06 54.3 113 28.3


User provided reference genes

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