Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 4.1e-307 1057.4 590 100.0
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.7e-297 1025.4 595 96.8
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.9e-289 997.7 596 94.1
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.2e-236 822.4 599 77.1
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.4e-230 803.1 610 74.9
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 5.9e-221 771.2 610 73.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.9e-199 699.1 611 67.8
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.4e-158 563.9 610 56.7
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 3.1e-145 519.6 596 51.3
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 7.9e-133 478.4 582 48.3
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 2.3e-132 476.9 602 49.3
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 6.7e-132 475.3 587 49.9
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 6.7e-132 475.3 602 47.3
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 3.3e-131 473.0 591 46.5
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.3e-130 468.8 581 49.6
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.9e-126 457.2 583 51.3
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 4.2e-126 456.1 582 50.3
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 5.5e-126 455.7 580 50.9
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.2e-125 454.5 596 49.5
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.2e-125 454.5 596 49.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.6e-125 454.1 584 47.4
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.1e-125 453.8 603 46.4
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.7e-125 453.4 592 47.5
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 6.1e-125 452.2 583 45.5
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 7.9e-125 451.8 575 50.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 3.3e-123 446.4 583 49.1
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.3e-123 446.4 581 49.2
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 3.3e-123 446.4 595 48.6
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.7e-123 445.7 586 46.9
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 5.7e-123 445.7 563 50.3
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 7.4e-123 445.3 576 46.7
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 9.7e-123 444.9 586 44.0
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.7e-122 444.1 575 48.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.8e-122 443.4 585 46.7
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 4.8e-122 442.6 581 46.3
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 6.3e-122 442.2 585 44.6
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 6.3e-122 442.2 564 48.6
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.4e-121 440.3 583 45.5
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 6.9e-121 438.7 580 47.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 9.1e-121 438.3 583 45.3
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 9.1e-121 438.3 584 48.6
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.5e-120 437.6 588 44.7
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.6e-120 436.8 553 48.8
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 4.5e-120 436.0 585 48.2
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.3e-119 434.5 577 44.0
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.7e-119 434.1 545 53.4
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.2e-119 433.7 545 53.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.2e-119 433.7 576 49.7
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.5e-119 432.2 549 51.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 6.5e-119 432.2 585 46.3
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.1e-118 431.4 592 46.1
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 2.5e-118 430.3 577 49.6
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 7.2e-118 428.7 577 51.0
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.7e-117 426.8 577 47.1
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 7.9e-117 425.2 582 43.3
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.0e-116 424.9 547 52.7
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.4e-116 424.5 610 43.0
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.4e-116 424.5 586 48.3
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 3.9e-116 422.9 577 50.4
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.1e-115 421.4 577 47.8
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.5e-115 421.0 596 47.0
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 5.7e-115 419.1 592 44.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 8.2e-114 415.2 590 44.2
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 4.1e-113 412.9 587 47.0
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 4.1e-113 412.9 586 43.3
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.2e-112 411.4 612 43.3
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.0e-112 410.6 553 44.3
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.3e-111 407.9 583 43.9
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.7e-111 407.5 581 46.0
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.7e-111 407.5 580 49.8
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 8.5e-111 405.2 559 47.4
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 3.2e-110 403.3 596 46.6
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.6e-109 401.0 551 42.1
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.7e-109 399.4 598 41.3
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.3e-107 393.3 591 45.3
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.4e-107 392.9 576 39.2
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 4.4e-107 392.9 585 47.9
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.8e-105 387.5 580 45.7
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 5.3e-105 386.0 592 40.4
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.6e-104 384.4 544 49.8
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 5.0e-103 379.4 570 41.8
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 8.5e-103 378.6 598 41.0
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.5e-102 377.9 567 43.7
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.9e-102 377.5 571 40.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.9e-102 377.5 583 45.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 4.2e-102 376.3 561 39.9
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 7.2e-102 375.6 568 40.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.2e-101 374.8 579 39.7
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 2.1e-101 374.0 568 39.3
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 3.6e-101 373.2 568 40.1
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.2e-99 368.2 513 42.3
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.7e-99 365.9 562 39.5
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.3e-98 364.8 561 39.6
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.4e-97 359.4 553 39.4
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.0e-96 357.5 472 43.4
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 2.0e-96 357.5 592 42.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.0e-96 357.5 568 44.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.9e-96 355.9 593 38.4
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 9.5e-94 348.6 479 44.5
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.8e-93 347.1 584 42.3
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 2.0e-91 340.9 587 39.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.1e-86 325.1 332 50.6
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.2e-85 321.6 312 54.5
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.0e-80 304.3 727 32.5
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 7.8e-80 302.4 556 40.5
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.0e-79 302.0 584 37.5
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.9e-79 300.1 652 33.9
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.1e-78 298.5 580 41.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.5e-78 297.4 553 36.5
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 7.3e-78 295.8 490 39.0
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 3.7e-74 283.5 286 49.3
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.2e-72 278.5 265 51.7
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 6.0e-72 276.2 614 37.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.7e-71 274.6 508 35.2
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 3.0e-71 273.9 584 35.8
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.1e-69 267.7 533 36.2
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.4e-67 260.4 567 32.6
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 4.1e-65 253.4 472 38.3
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.3e-58 231.9 678 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.1e-52 212.2 649 28.2
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.8e-52 211.5 298 37.6
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 3.4e-51 207.2 559 28.3
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 4.4e-51 206.8 211 48.3
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.6e-48 198.4 568 28.9
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.7e-47 194.9 448 41.3
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 4.3e-46 190.3 165 59.4
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.0e-44 183.7 510 34.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.2e-37 159.8 169 48.5
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 6.9e-36 156.4 184 54.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.3e-34 152.1 289 31.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 4.9e-34 150.2 270 33.0
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.3e-30 137.5 510 23.1
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.6e-29 135.2 155 54.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.7e-29 134.0 574 24.4
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 6.5e-26 123.2 144 46.5
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 7.9e-24 116.3 229 32.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 5.3e-20 103.6 163 34.4
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.1e-17 95.9 79 57.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.1e-17 95.9 79 57.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 9.4e-17 92.8 117 50.4
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 5.0e-10 70.5 67 52.2
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 9.4e-09 66.2 111 35.1
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 3.9e-07 60.8 135 32.6


User provided reference genes

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