Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 1.7e-131 472.6 233 100.0
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 5.3e-125 451.1 233 96.1
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 6.3e-110 401.0 194 99.0
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 3.4e-87 325.5 195 81.0
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 1.2e-79 300.4 196 78.6
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 3.0e-67 259.2 201 65.2
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 5.4e-61 238.4 190 62.1
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 1.2e-60 237.3 173 64.7
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 1.2e-60 237.3 184 64.7
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 1.6e-60 236.9 199 59.8
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 3.5e-60 235.7 190 60.5
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 3.0e-59 232.6 180 60.6
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 3.9e-59 232.3 201 56.7
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 8.7e-59 231.1 179 64.2
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 1.9e-58 229.9 196 59.2
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 2.5e-58 229.6 179 63.7
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 2.5e-58 229.6 184 59.2
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 2.5e-58 229.6 173 65.9
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 1.3e-57 227.3 188 61.2
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 1.3e-57 227.3 172 61.6
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.3e-57 227.3 186 60.8
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 2.8e-57 226.1 184 62.0
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 3.7e-57 225.7 177 65.5
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 3.7e-57 225.7 176 62.5
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 3.7e-57 225.7 173 64.7
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 4.8e-57 225.3 190 61.6
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 4.8e-57 225.3 181 61.3
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 8.1e-57 224.6 193 59.1
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 8.1e-57 224.6 177 61.6
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 2.4e-56 223.0 190 60.5
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 4.0e-56 222.2 172 62.2
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.2e-55 220.7 196 58.7
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 4.5e-55 218.8 196 55.1
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 4.5e-55 218.8 167 61.7
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 5.8e-55 218.4 183 56.3
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 7.6e-55 218.0 167 63.5
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 7.6e-55 218.0 167 63.5
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 9.9e-55 217.6 182 59.9
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 1.7e-54 216.9 167 62.3
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 3.8e-54 215.7 173 61.3
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 1.1e-53 214.2 185 58.4
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 5.5e-53 211.8 171 59.6
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 1.6e-52 210.3 180 57.8
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 2.1e-52 209.9 170 61.8
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 2.7e-52 209.5 176 59.1
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 3.5e-52 209.1 173 59.0
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 3.5e-52 209.1 183 57.9
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 4.6e-52 208.8 184 57.6
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 6.0e-52 208.4 182 56.0
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 1.0e-51 207.6 171 58.5
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 1.3e-51 207.2 169 60.4
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 1.3e-51 207.2 169 58.0
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 3.0e-51 206.1 185 57.3
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 3.9e-51 205.7 178 53.9
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 6.7e-51 204.9 191 56.0
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 6.7e-51 204.9 167 59.9
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 1.1e-50 204.1 171 57.3
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 2.5e-50 203.0 179 53.6
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 5.6e-50 201.8 178 52.8
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 7.4e-50 201.4 213 48.8
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 1.3e-49 200.7 174 55.7
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 1.3e-49 200.7 171 56.1
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.3e-49 200.7 171 56.1
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 8.2e-49 198.0 177 55.9
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.4e-48 197.2 169 58.6
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 1.8e-48 196.8 151 68.9
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 2.4e-48 196.4 174 56.9
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 3.1e-48 196.1 196 52.6
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 3.1e-48 196.1 184 53.8
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 4.0e-48 195.7 196 52.6
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 5.3e-48 195.3 169 57.4
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.2e-47 194.1 174 56.3
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 4.5e-47 192.2 169 56.2
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 1.3e-46 190.7 169 56.2
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 1.7e-46 190.3 169 56.2
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 2.2e-46 189.9 172 55.2
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 3.8e-46 189.1 169 56.2
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 3.8e-46 189.1 169 56.2
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.8e-46 189.1 166 54.2
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 3.8e-46 189.1 186 52.2
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 4.9e-46 188.7 186 53.8
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 8.4e-46 188.0 182 54.9
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 8.4e-46 188.0 169 56.2
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 8.4e-46 188.0 175 54.3
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 1.1e-45 187.6 185 54.1
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 2.5e-45 186.4 151 62.9
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 4.2e-45 185.7 170 55.9
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 7.1e-45 184.9 169 53.8
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 5.1e-43 178.7 151 59.6
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 1.5e-42 177.2 144 59.7
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 1.9e-42 176.8 145 60.7
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.6e-41 173.7 150 56.7
Oeu021025.1 Olea europaea HOM05D006401 ORTHO05D007864 2.5e-37 159.8 121 65.3
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 3.2e-37 159.5 138 56.5
Lju50A23T28 Lonicera japonica HOM05D006401 ORTHO05D007864 3.3e-34 149.4 112 67.9
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 5.9e-31 138.7 124 59.7
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 1.7e-30 137.1 83 74.7
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-27 124.8 205 36.6
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 1.0e-19 101.3 88 55.7
Nn8g41111 Nelumbo nucifera HOM05D006401 ORTHO05D007864 1.4e-16 90.9 79 57.0
Oeu021024.1 Olea europaea HOM05D006401 ORTHO05D007864 7.0e-16 88.6 80 52.5
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 2.3e-11 73.6 48 79.2
MELO3C009013.2 Cucumis melo HOM05D006401 ORTHO05D007864 2.0e-10 70.5 47 70.2
SEGI_17053 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.7e-10 68.9 56 48.2
CAN.G146.6 Capsicum annuum HOM05D006401 ORTHO05D007864 9.7e-10 68.2 44 77.3
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 7.0e-08 62.0 36 77.8
VMungo0464G1025 Vigna mungo HOM05D006401 ORTHO05D007864 9.1e-08 61.6 102 43.1


User provided reference genes

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