Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.9e-225 785.4 372 100.0
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 8.6e-218 760.0 368 97.8
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 3.4e-214 748.0 368 95.9
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 2.6e-166 589.0 361 79.2
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.4e-164 583.2 373 76.4
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 7.1e-164 580.9 371 76.5
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 2.8e-144 515.8 275 88.4
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 8.5e-141 504.2 372 65.9
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 1.0e-138 497.3 327 70.9
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.4e-138 496.9 320 75.9
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 5.2e-138 495.0 377 65.3
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.5e-137 493.4 334 72.2
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.5e-137 493.4 383 62.7
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.1e-135 487.3 327 69.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.8e-135 486.5 330 70.9
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.6e-134 483.4 388 61.6
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 1.6e-134 483.4 377 64.2
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 2.6e-134 482.6 371 65.0
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 5.5e-132 474.9 367 63.8
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 7.2e-132 474.6 371 63.3
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 3.6e-131 472.2 333 66.4
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 1.0e-130 470.7 371 62.0
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 3.0e-130 469.2 377 62.1
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 2.6e-129 466.1 373 61.4
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 4.4e-129 465.3 328 67.4
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 5.7e-129 464.9 373 62.5
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 2.8e-128 462.6 374 62.6
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 2.8e-128 462.6 325 68.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 4.8e-128 461.8 373 60.9
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 4.8e-128 461.8 374 62.0
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 6.3e-128 461.5 361 62.9
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 8.2e-128 461.1 372 62.4
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.1e-127 460.7 376 61.2
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.4e-127 459.5 352 66.2
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.4e-127 459.5 388 58.0
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 4.1e-127 458.8 365 61.6
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 7.0e-127 458.0 328 66.8
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 7.0e-127 458.0 369 62.6
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 7.0e-127 458.0 369 62.6
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 7.0e-127 458.0 347 65.1
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 3.5e-126 455.7 338 64.5
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.0e-125 454.1 359 63.0
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 1.3e-125 453.8 359 62.7
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.3e-125 453.8 348 62.6
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 1.3e-125 453.8 353 62.6
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 2.2e-125 453.0 332 65.7
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 3.8e-125 452.2 353 63.5
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 3.8e-125 452.2 417 56.1
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 6.5e-125 451.4 335 65.4
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 8.5e-125 451.1 357 61.3
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.9e-124 449.9 357 62.2
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.2e-124 449.1 367 60.8
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 4.2e-124 448.7 330 64.5
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 1.2e-123 447.2 341 64.5
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.6e-123 446.8 340 64.4
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-123 446.4 326 66.9
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-123 446.4 326 66.9
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 2.1e-123 446.4 371 60.6
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.7e-123 445.3 329 65.7
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 4.7e-123 445.3 370 58.9
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 6.1e-123 444.9 358 61.7
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.8e-122 443.4 345 62.3
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 5.2e-122 441.8 347 62.2
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 6.8e-122 441.4 365 61.1
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.5e-121 440.3 327 64.2
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.6e-121 439.5 328 64.0
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 7.5e-121 438.0 365 60.0
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 6.3e-120 434.9 331 61.9
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 6.3e-120 434.9 340 64.4
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 8.3e-120 434.5 326 65.0
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.4e-119 433.0 316 64.2
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 2.4e-119 433.0 384 57.8
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 5.4e-119 431.8 355 60.3
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 5.4e-119 431.8 351 61.0
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 9.1e-119 431.0 376 57.2
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 9.1e-119 431.0 356 59.3
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 1.6e-118 430.3 384 56.0
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 5.9e-118 428.3 367 57.8
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 1.0e-117 427.6 370 57.3
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.0e-117 427.6 364 57.7
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 2.9e-117 426.0 311 64.0
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 6.5e-117 424.9 331 63.1
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 5.5e-116 421.8 336 60.1
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 6.1e-115 418.3 367 56.4
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.3e-114 416.4 328 62.2
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 2.3e-114 416.4 337 58.5
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 6.8e-114 414.8 327 59.9
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 3.4e-113 412.5 272 71.3
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.8e-111 406.8 366 57.4
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.6e-110 403.7 325 59.1
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 3.5e-110 402.5 345 57.1
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.0e-109 401.0 307 62.5
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 2.3e-109 399.8 299 64.2
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.9e-109 399.4 379 55.9
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 2.9e-109 399.4 283 64.7
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 5.6e-108 395.2 345 56.5
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.8e-107 392.9 334 57.2
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 3.6e-107 392.5 284 66.2
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 5.7e-105 385.2 326 58.3
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 7.5e-105 384.8 322 59.9
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 2.3e-101 373.2 380 53.4
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 1.6e-99 367.1 351 53.3
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 3.6e-99 365.9 310 57.7
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 9.8e-97 357.8 281 60.5
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 3.5e-94 349.4 395 48.1
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 1.8e-90 337.0 341 51.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 3.1e-90 336.3 315 53.7
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 3.5e-86 322.8 331 52.3
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 3.0e-85 319.7 357 49.9
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 3.8e-80 302.8 278 55.4
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 6.4e-80 302.0 294 50.3
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.2e-73 281.2 256 55.1
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.2e-71 272.7 231 57.6
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 4.6e-70 269.2 300 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 2.9e-64 250.0 209 57.9
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 9.3e-63 245.0 285 41.4
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 3.9e-61 239.6 298 41.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 1.4e-58 231.1 293 43.0
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.3e-53 213.8 303 40.3
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 6.0e-46 189.1 129 68.2
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.3e-35 154.8 145 48.3
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 4.5e-33 146.4 86 76.7
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 2.7e-30 137.1 89 68.5
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.8e-26 124.4 199 36.7
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 7.2e-23 112.5 69 68.1
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 7.0e-18 95.9 82 53.7
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.7e-09 67.4 75 45.3
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 1.7e-08 64.7 42 64.3
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.5e-07 59.7 64 39.1


User provided reference genes

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