Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 2.9e-182 641.7 317 100.0
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 5.1e-179 630.9 321 97.5
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.4e-173 612.8 317 94.6
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 5.2e-155 551.2 317 85.8
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.3e-131 472.6 299 78.9
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 6.0e-119 431.4 312 66.0
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 3.0e-118 429.1 317 65.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 3.9e-118 428.7 312 64.1
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 1.1e-117 427.2 307 65.1
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 4.3e-117 425.2 317 65.0
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.2e-116 423.7 300 69.7
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 3.6e-116 422.2 306 65.4
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 8.1e-116 421.0 314 64.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.1e-115 420.6 310 63.5
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.4e-115 420.2 292 68.8
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.8e-115 419.9 315 63.8
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.3e-115 419.5 310 62.9
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 7.5e-114 414.5 299 64.5
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 9.8e-114 414.1 314 62.4
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 2.2e-113 412.9 314 63.1
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.9e-113 412.5 315 63.2
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.1e-112 410.6 315 62.5
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.4e-112 410.2 302 63.6
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.9e-112 409.8 303 65.0
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.9e-112 409.8 311 63.0
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 3.2e-112 409.1 315 62.9
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 4.1e-112 408.7 322 61.5
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 7.1e-112 407.9 313 62.6
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 7.1e-112 407.9 299 63.9
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 7.1e-112 407.9 315 64.1
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.6e-111 406.8 306 63.4
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 2.1e-111 406.4 326 60.4
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-111 405.2 301 64.5
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-111 405.2 301 64.5
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.6e-111 405.2 301 64.5
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 1.7e-110 403.3 289 67.1
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.7e-110 403.3 331 60.4
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 3.0e-110 402.5 312 61.9
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.1e-110 401.7 327 60.2
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.6e-110 401.0 327 60.2
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.1e-109 400.6 276 68.5
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.5e-109 400.2 303 63.0
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.5e-109 399.4 326 60.4
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 9.5e-109 397.5 317 60.3
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.2e-108 397.1 303 62.4
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.6e-108 396.7 294 63.3
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 4.7e-108 395.2 302 63.2
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 8.1e-108 394.4 303 61.4
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.8e-107 393.3 316 62.3
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 3.1e-107 392.5 299 61.5
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 4.4e-106 388.7 309 59.9
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 5.8e-106 388.3 300 61.3
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 9.9e-106 387.5 307 60.3
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.7e-105 386.7 311 60.8
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.2e-105 386.3 299 60.9
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.2e-105 386.3 299 60.9
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.2e-105 386.3 299 60.9
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.2e-105 386.3 299 60.9
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 2.2e-105 386.3 300 61.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 3.2e-104 382.5 299 61.2
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 5.4e-104 381.7 299 60.5
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.2e-103 380.6 302 59.9
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.6e-103 380.2 316 58.9
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 3.5e-103 379.0 307 58.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 4.6e-103 378.6 297 60.3
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.5e-101 373.6 310 58.1
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.9e-101 373.2 294 59.9
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 3.3e-101 372.5 299 60.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 5.6e-101 371.7 399 50.1
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 7.3e-101 371.3 294 59.2
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.6e-100 370.2 310 60.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 6.9e-99 364.8 286 60.5
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 8.9e-99 364.4 306 58.5
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 3.4e-98 362.5 315 56.8
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 9.9e-98 360.9 218 81.7
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.2e-97 359.8 288 60.1
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 2.2e-97 359.8 288 60.1
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 4.9e-97 358.6 290 60.0
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 2.7e-95 352.8 319 56.4
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.8e-92 342.8 242 72.7
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.2e-90 337.4 250 64.4
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.2e-90 337.4 303 55.1
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 3.4e-90 335.9 292 56.8
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 4.6e-87 325.5 278 59.4
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.5e-85 319.7 321 53.0
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 5.6e-85 318.5 250 59.2
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 2.1e-84 316.6 307 52.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 9.9e-82 307.8 309 51.5
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 5.5e-80 302.0 274 57.7
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 2.7e-79 299.7 305 50.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.7e-79 299.7 209 64.6
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 6.0e-79 298.5 302 55.6
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.1e-77 294.3 260 55.8
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 4.8e-76 288.9 230 59.6
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 5.3e-75 285.4 252 57.1
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 9.0e-67 258.1 292 48.3
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-63 247.3 192 64.6
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.6e-63 246.1 209 54.5
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.0e-62 243.0 182 65.9
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.1e-61 241.1 382 39.3
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.4e-59 233.4 232 51.7
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.7e-58 228.4 181 61.9
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.3e-57 227.6 181 61.3
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.8e-57 226.1 181 61.3
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.0e-57 225.7 181 61.3
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.5e-57 224.9 181 60.8
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-56 224.2 181 60.2
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.0e-53 213.8 190 54.7
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.9e-51 205.3 181 59.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.5e-48 196.8 152 63.2
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.0e-45 187.2 291 38.8
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-43 181.4 195 50.8
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.4e-43 181.0 299 38.8
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 3.1e-43 179.9 109 70.6
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.1e-40 171.4 103 72.8
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.5e-40 170.2 103 71.8
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.8e-38 164.1 184 47.3
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 9.1e-35 151.8 194 43.8
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 3.5e-34 149.8 103 67.0
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 7.2e-32 142.1 285 32.6
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-30 137.9 112 59.8
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.8e-30 135.2 112 58.0
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-29 134.0 124 56.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 4.4e-29 132.9 124 54.0
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.2e-28 130.6 271 34.3
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.5e-24 117.1 109 51.4
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.2e-22 109.4 65 70.8
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 5.2e-14 82.8 85 49.4
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 5.2e-14 82.8 85 49.4
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 9.8e-13 78.6 45 73.3
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.1e-06 57.0 111 36.9


User provided reference genes

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