Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.4e-253 879.0 413 100.0
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 2.0e-247 858.6 413 97.3
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.0e-239 832.0 413 93.7
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.9e-213 745.7 437 81.7
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 3.2e-213 745.0 428 82.7
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.9e-202 709.1 414 80.4
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 9.6e-194 680.2 437 74.4
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 4.6e-188 661.4 365 84.1
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 9.0e-176 620.5 391 72.1
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 2.0e-175 619.4 404 69.6
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 2.3e-171 605.9 421 68.2
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 5.1e-171 604.7 394 69.0
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.1e-170 603.6 366 74.6
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 5.7e-170 601.3 418 68.2
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 4.8e-169 598.2 393 69.2
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 6.3e-169 597.8 369 72.6
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 3.1e-168 595.5 362 72.9
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 1.5e-167 593.2 364 73.1
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.0e-167 592.8 384 69.0
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 7.7e-167 590.9 367 72.8
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 2.9e-166 589.0 307 88.9
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 2.9e-166 589.0 396 68.2
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 2.9e-166 589.0 364 72.3
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 3.8e-166 588.6 364 73.6
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.8e-166 588.6 379 69.4
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 3.8e-166 588.6 366 72.4
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 5.0e-166 588.2 398 66.8
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 5.0e-166 588.2 365 73.2
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.1e-165 587.0 366 71.3
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 2.5e-165 585.9 434 62.0
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.2e-165 585.1 367 71.9
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 7.2e-165 584.3 394 68.0
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 4.6e-164 581.6 373 68.9
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 6.1e-164 581.3 396 69.2
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 7.9e-164 580.9 409 65.8
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 7.9e-164 580.9 392 68.1
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.0e-163 580.5 367 71.1
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.0e-163 580.5 373 70.2
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 1.4e-163 580.1 367 70.0
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.8e-163 579.7 387 68.5
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 5.1e-163 578.2 420 64.0
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 5.1e-163 578.2 409 65.5
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 5.1e-163 578.2 367 71.7
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 6.7e-163 577.8 367 71.4
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 8.8e-163 577.4 366 71.3
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.1e-162 577.0 438 61.9
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 2.0e-162 576.2 397 65.7
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.3e-162 575.5 367 71.4
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 3.3e-162 575.5 367 72.5
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 2.2e-161 572.8 397 68.8
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 2.8e-161 572.4 369 69.9
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 1.1e-160 570.5 422 63.0
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.4e-160 570.1 371 69.5
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 4.1e-160 568.5 385 66.8
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.2e-159 567.0 422 63.5
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.2e-159 567.0 369 70.2
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 4.5e-159 565.1 386 66.8
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 5.9e-159 564.7 367 70.3
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 1.3e-158 563.5 366 70.5
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 2.9e-158 562.4 413 63.9
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 8.5e-158 560.8 366 71.0
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 2.5e-157 559.3 405 66.2
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 4.2e-157 558.5 412 62.9
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 5.5e-157 558.1 389 65.6
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 7.2e-157 557.8 367 70.0
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 2.7e-156 555.8 367 70.3
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 2.7e-156 555.8 345 72.5
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 6.1e-156 554.7 366 69.9
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 7.9e-156 554.3 412 62.9
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 1.4e-155 553.5 408 64.5
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.3e-155 552.7 408 64.5
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 3.0e-155 552.4 365 68.8
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 8.8e-155 550.8 392 63.8
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.2e-153 546.2 369 69.1
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.2e-153 546.2 368 66.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 2.8e-153 545.8 368 66.8
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 3.7e-153 545.4 374 69.8
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 3.1e-152 542.3 367 66.5
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 4.1e-152 542.0 376 67.3
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 1.0e-150 537.3 364 67.3
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.3e-150 537.0 394 61.2
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 2.9e-150 535.8 366 66.4
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 5.5e-149 531.6 375 64.5
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 9.4e-149 530.8 367 66.2
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 1.0e-147 527.3 330 73.3
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 4.0e-147 525.4 366 64.5
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 7.5e-146 521.2 382 65.7
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 6.3e-145 518.1 400 61.8
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 1.4e-144 516.9 347 69.2
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 1.4e-139 500.4 350 64.6
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 5.2e-139 498.4 355 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 4.2e-133 478.8 367 59.4
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 2.7e-132 476.1 363 59.0
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.0e-131 474.2 336 65.5
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.8e-131 473.4 306 69.9
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 1.0e-126 457.6 367 56.7
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.9e-126 456.1 291 68.4
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.1e-124 449.9 366 54.1
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.0e-123 446.0 366 53.3
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 2.3e-118 429.9 380 52.6
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.9e-117 426.8 277 69.7
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 1.7e-110 403.7 260 71.9
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 1.5e-109 400.6 366 50.5
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 3.0e-102 376.3 226 75.7
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 3.9e-102 375.9 281 65.1
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 5.6e-93 345.5 366 47.3
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 4.6e-79 299.3 381 43.0
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.2e-74 284.6 322 48.4
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 7.1e-72 275.4 241 58.1
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.6e-60 237.7 186 56.5
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 8.7e-54 215.3 467 30.4
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.5e-53 214.5 194 54.1
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 3.2e-48 196.8 236 39.8
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.8e-44 183.7 129 61.2
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 8.0e-31 139.0 102 54.9
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 2.1e-23 114.4 204 34.3
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.8e-22 111.3 90 60.0
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.1e-19 102.1 62 75.8
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 5.4e-19 99.8 59 74.6
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 6.5e-17 92.8 72 51.4
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 8.5e-17 92.4 65 60.0
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.5e-16 89.7 61 67.2
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 5.7e-13 79.7 43 76.7
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 3.7e-12 77.0 51 64.7
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.2e-07 62.0 42 54.8
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 6.1e-07 59.7 74 48.6


User provided reference genes

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