Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.3e-164 583.2 327 100.0
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.1e-163 578.2 327 99.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.6e-127 458.8 327 74.0
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.0e-122 443.0 321 74.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.6e-120 434.9 341 69.5
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 8.0e-119 431.0 375 64.3
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-117 426.0 251 83.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-115 420.6 316 71.2
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.1e-98 363.2 255 70.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.6e-98 362.1 255 69.0
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.9e-96 356.7 255 68.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.8e-94 350.1 327 64.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.5e-93 347.1 251 66.9
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.0e-93 346.7 270 62.6
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.6e-93 344.7 275 60.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 4.9e-92 342.0 326 53.1
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 3.2e-91 339.3 253 66.0
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 4.6e-90 335.5 330 56.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.3e-88 329.3 255 64.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.3e-88 329.3 262 60.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.3e-88 328.2 239 84.5
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.1e-87 326.6 251 61.8
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.6e-87 325.9 259 59.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 3.6e-87 325.9 251 62.5
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.0e-86 322.4 252 62.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.9e-86 321.6 279 56.6
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 4.4e-85 318.9 255 60.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 9.9e-85 317.8 251 61.8
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.7e-84 317.0 280 55.7
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 3.8e-84 315.8 251 60.2
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.4e-84 315.1 255 58.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.1e-83 314.3 251 59.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.4e-83 313.9 270 56.3
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.4e-83 312.0 250 59.6
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.4e-83 312.0 250 59.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 5.4e-83 312.0 258 58.5
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.4e-83 312.0 256 58.6
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 9.3e-83 311.2 250 59.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.6e-82 310.5 251 59.8
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.1e-82 310.1 271 56.5
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.5e-82 309.3 251 58.2
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.6e-82 308.9 268 56.3
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.0e-82 308.5 296 58.1
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 7.8e-82 308.1 255 58.4
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.0e-81 307.8 275 54.9
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.0e-81 306.2 287 54.7
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 3.9e-81 305.8 277 53.1
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 6.6e-81 305.1 261 57.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.1e-80 304.3 322 48.4
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-80 303.9 254 58.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.9e-80 303.5 257 56.0
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.3e-80 302.8 256 58.2
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 5.6e-80 302.0 251 58.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 5.6e-80 302.0 251 57.8
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 4.0e-78 295.8 261 56.7
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 5.3e-78 295.4 251 56.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 6.9e-78 295.0 250 56.0
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 9.0e-78 294.7 273 53.5
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-77 293.9 252 57.9
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 9.9e-77 291.2 254 55.9
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.2e-76 290.0 254 55.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.9e-76 289.7 236 59.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 8.4e-76 288.1 269 52.8
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.4e-75 286.6 371 43.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 5.4e-75 285.4 279 51.6
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 7.1e-75 285.0 251 55.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.6e-74 282.3 250 53.6
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 8.7e-73 278.1 384 41.7
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.3e-72 276.2 250 54.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 3.3e-72 276.2 257 53.3
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.3e-72 276.2 251 55.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.3e-72 276.2 265 52.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.3e-72 275.8 246 55.7
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.6e-71 273.9 248 53.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.8e-71 272.3 250 53.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.8e-70 270.4 255 48.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.8e-70 270.4 255 48.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.8e-70 270.4 255 47.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.1e-70 269.6 256 52.3
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 6.9e-70 268.5 251 53.0
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.2e-69 267.7 256 53.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.0e-69 266.9 269 52.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.8e-69 265.4 251 51.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.0e-68 264.6 251 51.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.8e-68 262.7 244 52.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 6.5e-68 261.9 251 51.4
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-67 260.8 270 48.1
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.9e-67 260.4 249 52.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.1e-66 256.9 271 48.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.7e-66 256.5 248 50.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 7.9e-66 255.0 248 50.4
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 7.9e-66 255.0 248 51.2
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.0e-65 254.6 248 51.2
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.3e-65 254.2 249 49.8
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.5e-64 250.8 251 49.8
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.3e-64 249.6 248 50.0
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.1e-63 246.9 280 46.1
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.8e-63 246.5 254 48.4
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.4e-62 244.2 249 48.2
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 4.0e-62 242.7 271 44.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.6e-61 240.0 181 63.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.9e-60 236.5 254 47.2
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.8e-60 236.1 229 62.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 5.0e-60 235.7 254 47.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.0e-60 235.7 254 47.2
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 6.5e-60 235.3 259 46.3
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-59 234.6 268 45.1
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.9e-59 233.8 269 44.6
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.2e-59 232.6 254 46.9
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 5.5e-59 232.3 218 51.8
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 9.3e-59 231.5 254 46.9
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 9.3e-59 231.5 185 62.7
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 5.1e-57 225.7 174 64.4
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.3e-55 218.8 258 46.1
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.3e-55 218.8 213 60.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-54 217.6 218 50.5
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.5e-53 212.6 124 83.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.8e-52 209.5 182 54.9
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.8e-52 209.5 253 42.7
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.4e-51 207.6 272 43.4
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.1e-49 199.1 249 44.6
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.0e-48 197.2 209 48.3
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.2e-44 183.7 214 47.7
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.5e-43 180.3 154 55.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.4e-43 178.3 140 60.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.8e-41 174.1 183 50.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 5.1e-41 172.6 103 75.7
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.7e-39 167.5 244 40.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.2e-39 165.2 128 61.7
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.5e-35 153.7 181 47.5
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.2e-35 153.3 149 49.0
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.5e-35 152.5 266 35.3
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 5.2e-33 146.0 325 30.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 4.5e-29 132.9 420 27.6
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 6.5e-28 129.0 249 32.1
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.1e-27 128.3 245 34.3
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.9e-27 127.5 262 32.4
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.2e-27 125.6 218 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.4e-22 110.5 237 29.5
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.4e-22 109.4 167 39.5
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.2e-20 104.0 86 61.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.5e-20 102.1 92 51.1
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.4e-17 94.7 142 40.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-16 91.3 234 29.1
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 9.8e-16 88.6 71 57.7
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.2e-15 87.4 73 63.0
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.4e-14 82.8 132 33.3
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.2e-13 81.6 142 35.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.2e-13 81.6 142 35.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 3.5e-13 80.1 204 28.4
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.3e-12 77.4 61 65.6
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 8.6e-12 75.5 66 56.1
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.1e-11 75.1 84 44.0
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 7.2e-11 72.4 61 55.7
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 6.1e-10 69.3 147 29.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 4.0e-09 66.6 55 60.0
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.4e-06 57.4 75 36.0


User provided reference genes

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