Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g007850.2 Solanum lycopersicum HOM05D009561 ORTHO05D003092 5.7e-275 950.3 476 100.0
Sopen07g003740 Solanum pennellii HOM05D009561 ORTHO05D003092 2.9e-218 761.9 402 95.8
PGSC0003DMG400006706 Solanum tuberosum HOM05D009561 ORTHO05D003092 3.5e-163 578.9 398 78.9
CAN.G763.8 Capsicum annuum HOM05D009561 ORTHO05D003092 2.5e-129 466.5 432 61.6
Nitab4.5_0003393g0030 Nicotiana tabacum HOM05D009561 ORTHO05D003092 1.2e-120 437.6 435 60.7
Nitab4.5_0000374g0130 Nicotiana tabacum HOM05D009561 ORTHO05D003092 1.9e-92 344.0 405 55.8
Peaxi162Scf00088g01216 Petunia axillaris HOM05D009561 ORTHO05D003092 3.0e-66 256.9 430 42.3
Dinv41472 Davidia involucrata HOM05D003107 ORTHO05D003092 1.4e-31 141.7 445 31.9
GSVIVG01015599001 Vitis vinifera HOM05D003107 ORTHO05D003092 9.2e-15 85.9 83 51.8
TAR636G3294 Trochodendron aralioides HOM05D003107 ORTHO05D003092 1.6e-14 85.1 473 26.0
Hma1.2p1_0497F.1_g166410 Hydrangea macrophylla HOM05D003107 ORTHO05D003092 2.1e-14 84.7 76 55.3
Haze_25497 Corylus avellana HOM05D003107 ORTHO05D003092 1.0e-13 82.4 212 34.4
HanXRQChr12g0356791 Helianthus annuus HOM05D003107 ORTHO05D003092 1.3e-13 82.0 163 36.2
Ciclev10007677m.g Citrus clementina HOM05D003107 ORTHO05D003092 2.3e-13 81.3 85 49.4
Duzib187G1951 Durio zibethinus HOM05D003107 ORTHO05D003092 3.9e-13 80.5 76 51.3
Actinidia07321 Actinidia chinensis HOM05D003107 ORTHO05D003092 5.1e-13 80.1 97 48.5
Lj6g0021163 Lotus japonicus HOM05D003107 ORTHO05D003092 5.1e-13 80.1 161 32.3
Gorai.010G061400 Gossypium raimondii HOM05D003107 ORTHO05D003092 8.6e-13 79.3 76 51.3
Potri.018G125500 Populus trichocarpa HOM05D003107 ORTHO05D003092 8.6e-13 79.3 67 55.2
Potri.T125307 Populus trichocarpa HOM05D003107 ORTHO05D003092 8.6e-13 79.3 67 55.2
Rhsim01G0061100 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.1e-12 79.0 238 32.8
Sabra18G0106800 Salix brachista HOM05D003107 ORTHO05D003092 1.1e-12 79.0 146 38.4
ECA234G1222 Erigeron canadensis HOM05D003107 ORTHO05D003092 1.5e-12 78.6 65 56.9
AUR62013303 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.9e-12 78.2 79 50.6
Cfa002924 Carpinus fangiana HOM05D003107 ORTHO05D003092 2.5e-12 77.8 264 30.7
Lsat_1_v5_gn_5_93901 Lactuca sativa HOM05D003107 ORTHO05D003092 2.5e-12 77.8 76 52.6
Aqoxy7G03629 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 3.3e-12 77.4 100 41.0
AUR62011180 Chenopodium quinoa HOM05D003107 ORTHO05D003092 4.3e-12 77.0 80 50.0
Manes.06G046500 Manihot esculenta HOM05D003107 ORTHO05D003092 7.3e-12 76.3 114 37.7
QL02p089967 Quercus lobata HOM05D003107 ORTHO05D003092 9.5e-12 75.9 116 38.8
Thecc.09G133300 Theobroma cacao HOM05D003107 ORTHO05D003092 9.5e-12 75.9 86 47.7
QL02p090013 Quercus lobata HOM05D003107 ORTHO05D003092 1.2e-11 75.5 149 32.2
Sc18g0000310 Simmondsia chinensis HOM05D003107 ORTHO05D003092 1.2e-11 75.5 64 54.7
HPP92_010519 Vanilla planifolia HOM05D003107 ORTHO05D003092 2.1e-11 74.7 83 43.4
Oeu052757.1 Olea europaea HOM05D003107 ORTHO05D003092 2.8e-11 74.3 118 39.8
Ah.09g224710 Amaranthus hybridus HOM05D003107 ORTHO05D003092 4.7e-11 73.6 91 42.9
Nn8g39562 Nelumbo nucifera HOM05D003107 ORTHO05D003092 1.2e-09 68.9 76 43.4
Os04g0644675 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 1.2e-09 68.9 135 33.3
SHI19950 Sapria himalayana HOM05D003107 ORTHO05D003092 2.0e-09 68.2 64 48.4
Lalb_Chr08g0234601 Lupinus albus HOM05D003107 ORTHO05D003092 2.6e-09 67.8 147 34.0
SHI22498 Sapria himalayana HOM05D003107 ORTHO05D003092 2.6e-09 67.8 76 42.1
Phvul.009G097700 Phaseolus vulgaris HOM05D003107 ORTHO05D003092 4.4e-09 67.0 164 28.0
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 7.6e-09 66.2 95 38.9
AL4G17160 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 1.7e-08 65.1 76 42.1
THA.LOC104819888 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 2.9e-08 64.3 66 45.5
CARHR115650 Cardamine hirsuta HOM05D003107 ORTHO05D003092 4.9e-08 63.5 96 32.3
Nn8g39282 Nelumbo nucifera HOM05D003107 ORTHO05D003092 4.9e-08 63.5 104 34.6
BcaC02g08335 Brassica carinata HOM05D003107 ORTHO05D003092 6.4e-08 63.2 66 43.9
C04p55580 Brassica napus HOM05D003107 ORTHO05D003092 6.4e-08 63.2 66 43.9
BolC4t27082H Brassica oleracea HOM05D003107 ORTHO05D003092 6.4e-08 63.2 66 43.9
Manes.03G065000 Manihot esculenta HOM05D003107 ORTHO05D003092 6.4e-08 63.2 76 42.1
A04p19850 Brassica napus HOM05D003107 ORTHO05D003092 8.4e-08 62.8 72 41.7
BraA04t17572Z Brassica rapa HOM05D003107 ORTHO05D003092 8.4e-08 62.8 72 41.7
Glyma.04G071900 Glycine max HOM05D003107 ORTHO05D003092 1.1e-07 62.4 105 33.3
AT2G25640 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 1.4e-07 62.0 66 43.9
BcaB06g28082 Brassica carinata HOM05D003107 ORTHO05D003092 1.4e-07 62.0 80 42.5
CDE04G1135 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 1.4e-07 62.0 92 37.0
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 1.9e-07 61.6 77 41.6
Thhalv10000617m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 2.4e-07 61.2 104 34.6
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 2.4e-07 61.2 150 32.0
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 2.4e-07 61.2 155 27.1
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 4.1e-07 60.5 114 30.7
Glyma.06G073200 Glycine max HOM05D003107 ORTHO05D003092 4.1e-07 60.5 159 26.4
THA.LOC104799220 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 4.1e-07 60.5 63 46.0
CiPaw.08G015500 Carya illinoinensis HOM05D003107 ORTHO05D003092 7.1e-07 59.7 72 38.9
Medtr1g063780 Medicago truncatula HOM05D003107 ORTHO05D003092 7.1e-07 59.7 61 42.6
DCAR_023265 Daucus carota HOM05D003107 ORTHO05D003092 9.2e-07 59.3 97 34.0
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 9.2e-07 59.3 82 41.5
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 9.2e-07 59.3 153 31.4
BolC2t10185H Brassica oleracea HOM05D003107 ORTHO05D003092 1.2e-06 58.9 72 38.9
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 1.2e-06 58.9 77 36.4
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 1.2e-06 58.9 104 32.7
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 1.2e-06 58.9 102 32.4
Prupe.7G018800 Prunus persica HOM05D003107 ORTHO05D003092 1.2e-06 58.9 67 38.8
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 1.2e-06 58.9 159 34.0
CSS0009859 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 1.6e-06 58.5 137 31.4
CSS0021250 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 1.6e-06 58.5 137 31.4
Cpa.g.sc91.11 Carica papaya HOM05D003107 ORTHO05D003092 1.6e-06 58.5 66 37.9
Gorai.004G274700 Gossypium raimondii HOM05D003107 ORTHO05D003092 1.6e-06 58.5 76 35.5
HanXRQChr13g0409611 Helianthus annuus HOM05D003107 ORTHO05D003092 1.6e-06 58.5 117 33.3
Nn2g11838 Nelumbo nucifera HOM05D003107 ORTHO05D003092 1.6e-06 58.5 139 32.4
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.6e-06 58.5 116 36.2
AT5G25520 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 2.1e-06 58.2 63 44.4
BraA10t44689Z Brassica rapa HOM05D003107 ORTHO05D003092 2.1e-06 58.2 75 41.3
CiPaw.07G217900 Carya illinoinensis HOM05D003107 ORTHO05D003092 2.1e-06 58.2 63 41.3
Duzib168G1962 Durio zibethinus HOM05D003107 ORTHO05D003092 2.1e-06 58.2 138 29.7
FAN27G2221 Fragaria x ananassa HOM05D003107 ORTHO05D003092 2.1e-06 58.2 68 41.2
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 2.1e-06 58.2 84 34.5
BcaC04g19228 Brassica carinata HOM05D003107 ORTHO05D003092 2.7e-06 57.8 63 44.4
C09p65430 Brassica napus HOM05D003107 ORTHO05D003092 2.7e-06 57.8 63 44.4
Gorai.009G011500 Gossypium raimondii HOM05D003107 ORTHO05D003092 2.7e-06 57.8 138 29.0
Sp4g05210 Schrenkiella parvula HOM05D003107 ORTHO05D003092 2.7e-06 57.8 141 29.8
BcaB08g37060 Brassica carinata HOM05D003107 ORTHO05D003092 3.5e-06 57.4 63 44.4
A10p26320 Brassica napus HOM05D003107 ORTHO05D003092 3.5e-06 57.4 95 35.8
Potri.006G246800 Populus trichocarpa HOM05D003107 ORTHO05D003092 3.5e-06 57.4 150 29.3
SHI09800 Sapria himalayana HOM05D003107 ORTHO05D003092 3.5e-06 57.4 96 38.5
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 3.5e-06 57.4 138 30.4
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 3.5e-06 57.4 77 41.6
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 4.6e-06 57.0 135 31.1
Actinidia15709 Actinidia chinensis HOM05D003107 ORTHO05D003092 4.6e-06 57.0 146 27.4
C02p41690 Brassica napus HOM05D003107 ORTHO05D003092 4.6e-06 57.0 66 39.4
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 4.6e-06 57.0 66 42.4
AL6G37320 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 6.0e-06 56.6 63 42.9
Ciclev10007403m.g Citrus clementina HOM05D003107 ORTHO05D003092 6.0e-06 56.6 135 33.3
Thhalv10012648m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 6.0e-06 56.6 63 42.9
arahy.Tifrunner.gnm1.ann1.8TMD5Z Arachis hypogaea HOM05D003107 ORTHO05D003092 7.8e-06 56.2 123 30.9
CDE07G1548 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 7.8e-06 56.2 148 27.7
Dinv30213 Davidia involucrata HOM05D003107 ORTHO05D003092 7.8e-06 56.2 155 29.0
Duzib187G0318 Durio zibethinus HOM05D003107 ORTHO05D003092 7.8e-06 56.2 134 29.1
Gohir.D08G257700 Gossypium hirsutum HOM05D003107 ORTHO05D003092 7.8e-06 56.2 138 29.7
Medtr3g108010 Medicago truncatula HOM05D003107 ORTHO05D003092 7.8e-06 56.2 143 30.8
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 7.8e-06 56.2 63 39.7
SHI16426 Sapria himalayana HOM05D003107 ORTHO05D003092 7.8e-06 56.2 76 34.2
Sp6g32170 Schrenkiella parvula HOM05D003107 ORTHO05D003092 7.8e-06 56.2 63 41.3


User provided reference genes

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