Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g006570.4 Solanum lycopersicum HOM05D010663 ORTHO05D011474 1.3e-145 519.6 247 100.0
Sopen07g002650 Solanum pennellii HOM05D010663 ORTHO05D011474 4.6e-135 484.6 244 94.7
PGSC0003DMG400027455 Solanum tuberosum HOM05D010663 ORTHO05D011474 6.5e-113 411.0 248 81.0
PGSC0003DMG400027453 Solanum tuberosum HOM05D010663 ORTHO05D011474 9.2e-75 284.3 243 58.4
PGSC0003DMG400027454 Solanum tuberosum HOM05D010663 ORTHO05D011474 2.5e-72 276.2 145 91.0
Peaxi162Scf00457g00010 Petunia axillaris HOM05D010663 ORTHO05D011474 3.1e-70 269.2 252 54.8
CAN.G584.32 Capsicum annuum HOM05D010663 ORTHO05D011474 1.7e-68 263.5 248 55.6
CAN.G584.36 Capsicum annuum HOM05D010663 ORTHO05D011474 3.3e-56 222.6 220 47.3
Peaxi162Scf00457g00004 Petunia axillaris HOM05D010663 ORTHO05D011474 5.8e-53 211.8 155 64.5
CAN.G567.53 Capsicum annuum HOM05D000001 ORTHO05D011474 5.1e-25 119.0 222 33.3
Peaxi162Scf00803g00534 Petunia axillaris HOM05D000001 ORTHO05D011474 8.7e-25 118.2 224 35.3
CAN.G584.34 Capsicum annuum HOM05D010663 ORTHO05D011474 2.5e-24 116.7 93 62.4
CAN.G2485.1 Capsicum annuum HOM05D010663 ORTHO05D011474 2.8e-23 113.2 225 33.3
CAN.G567.39 Capsicum annuum HOM05D010663 ORTHO05D011474 2.8e-23 113.2 225 33.3
CAN.G584.33 Capsicum annuum HOM05D018348 ORTHO05D019393 2.8e-23 113.2 244 31.6
Dinv34984 Davidia involucrata HOM05D000001 ORTHO05D000501 1.2e-21 107.8 194 34.0
Dinv34986 Davidia involucrata HOM05D000001 ORTHO05D000501 1.2e-21 107.8 194 34.0
PGSC0003DMG400040677 Solanum tuberosum HOM05D010663 ORTHO05D011474 2.6e-21 106.7 156 44.9
Peaxi162Scf01075g00113 Petunia axillaris HOM05D000001 ORTHO05D020963 1.3e-20 104.4 213 35.7
Rhsim12G0135800 Rhododendron simsii HOM05D000001 ORTHO05D000501 1.4e-19 100.9 230 30.0
Actinidia25576 Actinidia chinensis HOM05D000001 ORTHO05D000501 1.9e-19 100.5 227 29.1
Nitab4.5_0002231g0010 Nicotiana tabacum HOM05D010663 ORTHO05D020898 1.9e-16 90.5 245 29.8
QL08p053306 Quercus lobata HOM05D000001 ORTHO05D000501 3.3e-16 89.7 224 29.0
Sc13g0007230 Simmondsia chinensis HOM05D034300 ORTHO05D011474 5.7e-16 89.0 219 26.5
PGSC0003DMG400027473 Solanum tuberosum HOM05D018348 ORTHO05D019393 9.6e-16 88.2 146 38.4
Ciclev10032651m.g Citrus clementina HOM05D000001 ORTHO05D000501 1.3e-15 87.8 235 26.0
Lalb_Chr16g0385781 Lupinus albus HOM05D000001 ORTHO05D000501 1.6e-15 87.4 226 29.2
Nitab4.5_0001482g0040 Nicotiana tabacum HOM05D000001 ORTHO05D011474 4.8e-15 85.9 135 37.0
CiPaw.05G134600 Carya illinoinensis HOM05D000001 ORTHO05D000501 6.3e-15 85.5 225 28.0
VMungo0251G2849 Vigna mungo HOM05D000001 ORTHO05D000501 8.2e-15 85.1 218 30.3
COL.COLO4_22959 Corchorus olitorius HOM05D000001 ORTHO05D000501 1.1e-14 84.7 237 29.1
Dinv16652 Davidia involucrata HOM05D000001 ORTHO05D000501 1.4e-14 84.3 219 28.3
Gohir.D12G167800 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.8e-14 84.0 236 28.4
Actinidia25577 Actinidia chinensis HOM05D000001 ORTHO05D011474 2.4e-14 83.6 175 29.1
CDE09G0266 Ceratophyllum demersum HOM05D000001 ORTHO05D000501 3.1e-14 83.2 235 28.9
arahy.Tifrunner.gnm1.ann1.E6ZCRX Arachis hypogaea HOM05D000001 ORTHO05D000501 5.3e-14 82.4 218 25.7
Cfa006668 Carpinus fangiana HOM05D000001 ORTHO05D000501 5.3e-14 82.4 212 27.4
Phvul.002G170800 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 5.3e-14 82.4 218 29.8
CAN.G584.35 Capsicum annuum HOM05D018348 ORTHO05D019393 9.0e-14 81.6 162 31.5
Gorai.008G180700 Gossypium raimondii HOM05D000001 ORTHO05D000501 9.0e-14 81.6 243 28.8
Ciclev10032674m.g Citrus clementina HOM05D000001 ORTHO05D000501 1.2e-13 81.3 235 27.2
Dinv34151 Davidia involucrata HOM05D000001 ORTHO05D000501 1.5e-13 80.9 223 29.1
MSTRG.25466 Avicennia marina HOM05D000001 ORTHO05D000501 2.0e-13 80.5 242 26.9
HPP92_004330 Vanilla planifolia HOM05D000001 ORTHO05D000501 2.0e-13 80.5 232 28.9
Migut.L01287 Erythranthe guttata HOM05D000001 ORTHO05D000501 2.6e-13 80.1 231 28.6
Migut.N00684 Erythranthe guttata HOM05D000001 ORTHO05D000501 2.6e-13 80.1 158 29.7
Gohir.A12G164700 Gossypium hirsutum HOM05D000001 ORTHO05D000501 2.6e-13 80.1 243 28.4
arahy.Tifrunner.gnm1.ann1.VQ1W7S Arachis hypogaea HOM05D000001 ORTHO05D000501 3.4e-13 79.7 214 26.6
AT2G39780 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 1.3e-12 77.8 161 29.8
PSO210G7775 Papaver somniferum HOM05D000001 ORTHO05D000501 1.3e-12 77.8 222 27.9
CSS0029351 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000501 1.7e-12 77.4 239 27.2
Rhsim01G0145400 Rhododendron simsii HOM05D000001 ORTHO05D000501 1.7e-12 77.4 228 26.3
Sopen07g002630 Solanum pennellii HOM05D010663 ORTHO05D011474 1.7e-12 77.4 53 66.0
PSO017G5772 Papaver somniferum HOM05D000001 ORTHO05D000501 2.2e-12 77.0 217 27.6
Sp7g09390 Schrenkiella parvula HOM05D000001 ORTHO05D000501 3.8e-12 76.3 161 29.2
Cpa.g.sc128.33 Carica papaya HOM05D000001 ORTHO05D000501 5.0e-12 75.9 226 27.9
DCAR_007156 Daucus carota HOM05D000001 ORTHO05D000501 5.0e-12 75.9 215 27.4
RcHm_v2.0_Chr2g0111581 Rosa chinensis HOM05D000001 ORTHO05D000501 5.0e-12 75.9 227 27.3
MSTRG.12737 Avicennia marina HOM05D000001 ORTHO05D000501 6.5e-12 75.5 161 29.2
CiPaw.07G025200 Carya illinoinensis HOM05D000001 ORTHO05D000501 6.5e-12 75.5 201 31.3
RcHm_v2.0_Chr2g0111611 Rosa chinensis HOM05D000001 ORTHO05D000501 6.5e-12 75.5 227 27.3
Glyma.02G064200 Glycine max HOM05D000001 ORTHO05D016299 8.4e-12 75.1 228 27.6
Potri.008G086700 Populus trichocarpa HOM05D000001 ORTHO05D000501 1.9e-11 73.9 219 27.4
Solyc07g006550.2 Solanum lycopersicum HOM05D010663 ORTHO05D011474 5.5e-11 72.4 53 60.4
DCAR_031017 Daucus carota HOM05D000001 ORTHO05D000501 7.2e-11 72.0 216 26.4
arahy.Tifrunner.gnm1.ann1.YHJ5ZY Arachis hypogaea HOM05D000001 ORTHO05D000501 2.1e-10 70.5 224 27.2
Migut.D00765 Erythranthe guttata HOM05D000001 ORTHO05D000501 3.5e-10 69.7 163 25.2
Rhsim12G0086200 Rhododendron simsii HOM05D000001 ORTHO05D000501 3.5e-10 69.7 207 27.5
Manes.05G102500 Manihot esculenta HOM05D000001 ORTHO05D000501 4.6e-10 69.3 225 25.8
C04p43080 Brassica napus HOM05D000001 ORTHO05D000501 7.9e-10 68.6 161 28.6
A04p09160 Brassica napus HOM05D000001 ORTHO05D000501 1.3e-09 67.8 161 28.6
BraA04t16609Z Brassica rapa HOM05D000001 ORTHO05D000501 1.3e-09 67.8 161 28.6
Thhalv10027545m.g Eutrema salsugineum HOM05D000001 ORTHO05D000501 1.8e-09 67.4 161 29.2
Medtr5g086410 Medicago truncatula HOM05D000001 ORTHO05D000501 6.7e-09 65.5 230 26.5
arahy.Tifrunner.gnm1.ann1.F1ZF7M Arachis hypogaea HOM05D000001 ORTHO05D000501 8.7e-09 65.1 240 25.8
Peaxi162Scf00746g00027 Petunia axillaris HOM05D030197 ORTHO05D020963 8.7e-09 65.1 241 27.0
BcaNung03940 Brassica carinata HOM05D000001 ORTHO05D000501 1.9e-08 63.9 162 27.2
BcaNung03945 Brassica carinata HOM05D000001 ORTHO05D000501 1.9e-08 63.9 162 27.2
RcHm_v2.0_Chr3g0458491 Rosa chinensis HOM05D000001 ORTHO05D017917 2.5e-08 63.5 228 26.8
Nitab4.5_0002547g0030 Nicotiana tabacum HOM05D035678 ORTHO05D020898 4.3e-08 62.8 219 25.6
Peaxi162Scf02151g00011 Petunia axillaris HOM05D030197 ORTHO05D020963 5.7e-08 62.4 241 26.6
Lj6C787G16 Lonicera japonica HOM05D000001 ORTHO05D000501 1.3e-07 61.2 186 26.9
RcHm_v2.0_Chr2g0110251 Rosa chinensis HOM05D017855 ORTHO05D017917 1.3e-07 61.2 159 25.2
ClCG10G015120 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.6e-07 60.8 229 26.6
SalBow2G1658 Salvia bowleyana HOM05D000001 ORTHO05D000501 2.2e-07 60.5 264 22.3
ECA233G2882 Erigeron canadensis HOM05D000001 ORTHO05D000501 2.8e-07 60.1 177 26.0
Pp3c1_22510 Physcomitrium patens HOM05D000001 ORTHO05D000501 2.8e-07 60.1 193 26.4
SGA_v2.0_scaffold158G37513 Striga asiatica HOM05D000001 ORTHO05D000501 4.8e-07 59.3 167 24.6
Migut.H00903 Erythranthe guttata HOM05D000001 ORTHO05D000501 8.2e-07 58.5 138 26.8
Lalb_Chr19g0138341 Lupinus albus HOM05D000001 ORTHO05D000501 8.2e-07 58.5 275 25.5
Sc13g0007220 Simmondsia chinensis HOM05D034300 ORTHO05D011474 1.1e-06 58.2 105 29.5
Actinidia14168 Actinidia chinensis HOM05D000001 ORTHO05D011474 6.9e-06 55.5 103 29.1
Nitab4.5_0000244g0090 Nicotiana tabacum HOM05D010663 ORTHO05D011474 6.9e-06 55.5 49 57.1


User provided reference genes

Program Settings