Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.2e-28 128.3 64 100.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.3e-25 119.0 67 94.0
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.2e-22 107.1 68 82.4
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.2e-22 107.1 68 82.4
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 5.7e-21 103.6 69 82.6
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 7.5e-21 103.2 70 77.1
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 4.3e-16 87.4 67 71.6
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 9.5e-16 86.3 61 77.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 9.5e-16 86.3 68 67.6
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.2e-15 85.9 67 67.2
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 3.6e-15 84.3 49 81.6
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 4.7e-15 84.0 50 78.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 4.7e-15 84.0 52 82.7
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 6.2e-15 83.6 50 78.0
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 8.0e-15 83.2 57 71.9
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.4e-14 82.4 50 78.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.8e-14 82.0 49 81.6
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.8e-14 82.0 53 71.7
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.8e-14 82.0 68 66.2
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 2.3e-14 81.6 50 74.0
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.1e-14 81.3 49 77.6
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 6.8e-14 80.1 62 64.5
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 6.8e-14 80.1 48 77.1
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 6.8e-14 80.1 48 77.1
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 6.8e-14 80.1 68 63.2
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.5e-13 79.0 47 80.9
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.5e-13 79.0 62 67.7
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.0e-13 78.6 60 65.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.6e-13 78.2 58 63.8
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 2.6e-13 78.2 50 74.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 2.6e-13 78.2 49 75.5
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 3.4e-13 77.8 56 67.9
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 4.4e-13 77.4 57 66.7
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 5.8e-13 77.0 47 74.5
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 5.8e-13 77.0 50 74.0
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 7.5e-13 76.6 50 70.0
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 9.8e-13 76.3 60 63.3
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.3e-12 75.9 48 75.0
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 1.7e-12 75.5 50 70.0
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.7e-12 75.5 42 83.3
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.2e-12 75.1 58 65.5
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 2.2e-12 75.1 50 72.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 3.7e-12 74.3 51 70.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 3.7e-12 74.3 50 70.0
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 4.9e-12 73.9 49 73.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 4.9e-12 73.9 50 72.0
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.9e-12 73.9 50 68.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 6.4e-12 73.6 54 68.5
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.1e-11 72.8 56 67.9
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 1.1e-11 72.8 48 70.8
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.9e-11 72.0 48 70.8
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 1.9e-11 72.0 59 59.3
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.4e-11 71.6 48 70.8
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 2.4e-11 71.6 61 59.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 4.1e-11 70.9 50 66.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 4.1e-11 70.9 50 66.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 4.1e-11 70.9 50 66.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 4.1e-11 70.9 50 66.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 7.0e-11 70.1 50 66.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 7.0e-11 70.1 44 75.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 7.0e-11 70.1 61 60.7
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 7.0e-11 70.1 42 81.0
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 7.0e-11 70.1 64 57.8
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.2e-10 69.3 50 62.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 1.6e-10 68.9 50 64.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 1.6e-10 68.9 50 64.0
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.0e-10 68.6 45 75.6
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.7e-10 68.2 50 62.0
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 2.7e-10 68.2 60 58.3
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.7e-10 68.2 55 63.6
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 2.7e-10 68.2 60 58.3
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 3.5e-10 67.8 50 64.0
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 3.5e-10 67.8 60 61.7
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 4.6e-10 67.4 56 66.1
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 4.6e-10 67.4 48 64.6
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.0e-09 66.2 56 64.3
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.7e-09 65.5 45 73.3
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 3.9e-09 64.3 50 60.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 3.9e-09 64.3 43 72.1
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 5.0e-09 63.9 58 56.9
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 6.6e-09 63.5 54 61.1
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.1e-08 62.8 57 50.9
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 1.5e-08 62.4 45 66.7
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.5e-08 62.4 37 75.7
Migut.K01062 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.9e-08 62.0 44 68.2
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.5e-08 61.6 38 76.3
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 3.3e-08 61.2 43 69.8
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 4.3e-08 60.8 45 64.4
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.2e-07 59.3 43 69.8
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 6.2e-07 57.0 47 53.2
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 1.8e-06 55.5 47 53.2
HanXRQChr10g0282781 Helianthus annuus HOM05D007833 ORTHO05D009855 1.8e-06 55.5 41 73.2
AUR62036455 Chenopodium quinoa HOM05D045935 ORTHO05D009855 2.3e-06 55.1 39 64.1
MSTRG.12567 Avicennia marina HOM05D007833 ORTHO05D009855 6.8e-06 53.5 38 71.1


User provided reference genes

Program Settings