Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 0.0e+00 1184.1 592 100.0
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 0.0e+00 1173.3 592 99.0
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 0.0e+00 1127.9 592 95.8
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.8e-273 945.7 608 81.2
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.9e-272 942.2 610 80.8
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.9e-252 875.2 600 75.8
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.0e-249 866.7 601 76.7
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.0e-248 862.4 601 74.9
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.7e-247 858.2 626 74.1
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 2.5e-243 845.5 599 74.5
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.0e-242 840.5 622 73.2
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.0e-241 840.1 603 74.8
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.7e-226 788.9 597 69.7
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.7e-221 772.3 612 67.8
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.0e-220 770.4 598 68.9
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 9.5e-219 763.8 601 67.9
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 2.4e-214 749.2 614 65.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 4.7e-210 734.9 602 64.6
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.0e-209 733.8 602 64.6
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.4e-209 733.4 602 64.0
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.2e-209 731.5 602 64.3
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 4.4e-208 728.4 598 65.9
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.7e-207 726.5 602 63.6
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.2e-207 726.1 607 66.1
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.4e-206 722.6 598 65.2
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 2.0e-205 719.5 607 62.9
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.0e-205 719.5 598 63.7
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 3.0e-204 715.7 602 64.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.9e-203 713.0 599 64.1
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 9.5e-203 710.7 592 64.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.6e-202 708.8 499 72.5
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 8.0e-202 707.6 599 63.6
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.4e-201 706.8 619 63.3
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.0e-201 705.3 597 63.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.0e-200 703.0 597 64.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.6e-200 702.6 593 62.6
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 9.8e-200 700.7 601 63.4
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.7e-199 699.9 577 65.9
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.4e-198 696.0 604 62.9
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.4e-198 696.0 588 63.9
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.6e-197 693.3 596 61.9
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 3.5e-197 692.2 575 65.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 3.5e-197 692.2 579 63.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 7.8e-197 691.0 587 64.2
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.7e-196 689.9 590 63.7
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.9e-196 688.7 601 62.6
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 5.1e-196 688.3 490 73.1
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.6e-196 687.6 581 63.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 4.3e-195 685.3 598 62.0
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 4.3e-195 685.3 610 61.1
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 7.3e-195 684.5 532 66.7
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.2e-194 683.7 594 60.9
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.1e-194 682.9 598 63.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.8e-194 682.6 577 62.9
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 2.3e-193 679.5 615 61.3
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.0e-193 678.7 599 62.3
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 5.2e-193 678.3 530 68.9
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 6.8e-193 677.9 594 61.8
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 9.9e-192 674.1 585 62.2
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.7e-191 673.3 591 61.8
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 6.4e-191 671.4 602 61.5
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 6.4e-191 671.4 610 58.5
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.9e-190 669.8 597 60.1
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.4e-190 669.5 615 59.8
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 3.2e-190 669.1 599 59.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 4.1e-190 668.7 590 61.9
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 7.1e-190 667.9 581 61.4
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 7.1e-190 667.9 626 57.5
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 9.2e-190 667.5 577 61.7
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.6e-189 666.8 553 63.3
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.6e-189 665.2 580 62.1
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 6.0e-189 664.8 628 57.6
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.7e-188 663.3 581 60.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.3e-188 662.9 600 60.7
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 5.1e-188 661.8 583 61.2
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 6.6e-188 661.4 585 61.5
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.9e-187 659.8 598 60.9
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.9e-187 659.8 597 61.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.6e-186 656.8 606 59.7
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-186 656.4 615 58.7
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 6.2e-186 654.8 593 59.9
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 3.1e-185 652.5 600 59.2
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 5.2e-185 651.7 606 59.7
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 8.9e-185 651.0 605 59.2
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.2e-184 650.6 594 58.8
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.0e-184 649.8 577 60.5
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 3.4e-184 649.0 605 59.5
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.9e-184 647.5 567 60.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.3e-183 647.1 582 60.3
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.3e-183 647.1 618 58.9
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.3e-183 647.1 605 58.0
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.9e-183 646.0 672 55.1
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.1e-182 644.0 656 54.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-182 644.0 594 60.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 3.2e-182 642.5 656 54.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.3e-180 637.1 586 60.2
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.9e-180 635.6 605 58.7
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.1e-179 634.0 603 58.9
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-179 633.6 543 63.7
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 3.3e-179 632.5 607 59.0
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.3e-179 632.5 607 59.1
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.3e-179 632.5 602 57.8
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 5.6e-179 631.7 559 62.3
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 9.6e-179 630.9 605 58.5
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 9.6e-179 630.9 605 58.7
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.6e-178 630.2 576 59.5
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 3.6e-178 629.0 639 56.7
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.1e-177 627.5 607 58.5
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.4e-177 627.1 605 58.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 9.0e-177 624.4 589 58.2
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 9.9e-176 620.9 600 57.7
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.2e-175 619.8 605 57.2
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.8e-175 619.0 595 58.5
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 3.8e-175 619.0 593 58.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.1e-174 617.5 566 59.9
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.4e-174 617.1 597 57.6
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 7.1e-174 614.8 596 58.4
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.3e-172 609.8 592 57.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.6e-172 608.2 606 57.1
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-171 607.1 611 56.6
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-170 603.6 632 54.4
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.8e-170 602.8 619 55.6
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 7.6e-168 594.7 596 55.2
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.2e-167 593.2 486 65.4
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.1e-166 588.2 597 55.1
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 9.6e-163 577.8 572 56.1
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.8e-162 576.2 572 56.3
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-157 560.8 569 55.7
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.6e-157 558.9 470 61.9
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.6e-157 558.9 585 55.0
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.3e-153 545.4 338 81.4
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.5e-152 543.9 557 55.1
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.6e-152 543.1 571 53.4
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.5e-150 536.6 512 58.6
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.6e-149 533.9 647 49.6
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.8e-148 530.4 596 51.8
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.1e-142 511.1 575 50.6
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 6.3e-138 495.4 452 59.5
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.9e-134 483.8 593 48.7
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 3.6e-133 479.6 574 48.4
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.8e-130 469.9 447 58.6
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.4e-129 467.6 567 49.6
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.5e-128 462.6 388 63.7
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 3.2e-118 429.9 316 72.8
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 8.5e-111 405.2 638 39.5
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 3.6e-109 399.8 391 56.3
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.2e-97 360.1 333 58.0
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.9e-89 334.3 391 50.6
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 3.4e-67 260.4 163 82.8
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-62 245.4 274 55.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 8.1e-61 239.2 234 59.0
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 3.1e-60 237.3 253 53.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.2e-48 198.7 138 76.8
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 9.6e-38 162.5 437 30.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 7.6e-35 152.9 476 26.1
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.3e-31 142.1 568 25.4
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.3e-29 135.6 178 51.1
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.0e-23 115.9 88 65.9
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.1e-17 95.9 66 78.8
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 3.2e-17 94.4 105 45.7
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 4.2e-17 94.0 90 51.1
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 9.4e-17 92.8 69 55.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.7e-16 91.3 135 43.7
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 2.3e-15 88.2 83 56.6
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.0e-15 87.8 62 69.4
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 4.8e-13 80.5 103 45.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 7.0e-12 76.6 102 46.1
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.2e-11 75.9 202 30.2
Duzib116G0512 Durio zibethinus HOM05D001905 ORTHO05D001820 3.6e-08 64.3 447 22.6
Gohir.A06G021300 Gossypium hirsutum HOM05D001905 ORTHO05D001820 2.3e-07 61.6 436 23.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.3e-07 61.6 35 80.0
RhsimUnG0001000 Rhododendron simsii HOM05D004045 ORTHO05D004923 5.2e-07 60.5 34 76.5
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 8.8e-07 59.7 36 77.8
HanXRQChr14g0460411 Helianthus annuus HOM05D001905 ORTHO05D001820 1.5e-06 58.9 428 22.9
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 1.5e-06 58.9 122 32.8
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.3e-06 57.8 36 86.1
Gohir.D06G019072 Gossypium hirsutum HOM05D001905 ORTHO05D001820 4.4e-06 57.4 427 23.2


User provided reference genes

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