Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.1e-136 490.0 250 100.0
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.8e-118 429.5 221 98.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.7e-117 424.5 221 97.3
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.7e-116 422.9 221 96.8
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.9e-116 422.2 221 96.4
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.9e-116 422.2 221 96.8
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.5e-114 415.2 221 94.6
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 4.6e-114 414.8 221 94.6
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.2e-107 392.1 221 87.8
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 4.1e-107 391.7 221 87.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 9.2e-107 390.6 221 87.8
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.6e-103 379.8 221 86.4
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.1e-103 379.4 218 86.7
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.4e-102 376.7 221 84.2
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 5.2e-102 374.8 220 86.4
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 5.2e-102 374.8 218 85.3
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.5e-101 373.2 221 84.2
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 2.6e-101 372.5 220 84.5
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 3.4e-101 372.1 221 83.3
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 5.8e-101 371.3 221 85.1
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 9.8e-101 370.5 235 81.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.3e-100 370.2 218 84.4
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.3e-100 370.2 222 84.2
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.7e-100 369.8 221 85.1
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 2.9e-100 369.0 221 83.7
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 3.7e-100 368.6 221 82.8
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.4e-99 366.7 221 84.6
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.4e-99 366.7 222 85.6
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.4e-99 366.7 221 85.1
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.9e-99 366.3 221 84.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.4e-99 365.9 221 81.9
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.2e-99 365.5 221 84.6
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.2e-99 365.5 221 84.6
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.2e-99 365.5 221 84.6
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 3.2e-99 365.5 222 83.8
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 4.1e-99 365.2 221 83.3
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.1e-99 365.2 222 82.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 4.1e-99 365.2 221 82.8
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.4e-99 364.8 222 82.9
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.4e-99 364.8 223 82.5
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 7.1e-99 364.4 221 84.6
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 7.1e-99 364.4 241 77.6
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 7.1e-99 364.4 221 81.4
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 9.2e-99 364.0 222 82.0
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.2e-98 363.6 221 83.7
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.6e-98 363.2 221 83.7
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 1.6e-98 363.2 221 83.3
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.6e-98 363.2 221 84.2
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.1e-98 362.8 221 83.3
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.1e-98 362.8 221 83.7
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.7e-98 362.5 221 81.9
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.7e-98 362.5 220 82.3
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.5e-98 362.1 219 83.6
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 6.0e-98 361.3 222 83.3
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 6.0e-98 361.3 218 81.2
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.0e-97 360.5 218 81.7
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.3e-97 360.1 221 81.0
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.3e-97 359.4 222 82.9
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.3e-97 359.4 218 80.7
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 2.3e-97 359.4 222 82.4
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 5.1e-97 358.2 218 81.2
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.6e-97 357.8 221 82.4
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 8.6e-97 357.5 219 83.1
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 8.6e-97 357.5 221 83.3
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.1e-96 357.1 221 80.1
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.5e-96 356.7 222 80.6
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.9e-96 356.3 218 81.7
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 2.5e-96 355.9 221 79.6
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 2.5e-96 355.9 221 79.6
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 3.3e-96 355.5 220 84.1
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 3.3e-96 355.5 220 84.1
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.3e-96 355.1 222 82.0
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.2e-95 353.6 221 79.6
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.2e-95 353.6 218 81.2
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.6e-95 353.2 219 81.7
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.6e-95 353.2 219 81.3
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.8e-95 352.4 222 80.2
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 3.6e-95 352.1 218 80.7
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.6e-95 352.1 218 80.7
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 4.7e-95 351.7 222 78.8
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.7e-95 351.7 221 80.1
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 4.7e-95 351.7 221 78.7
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 6.2e-95 351.3 219 81.3
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 6.2e-95 351.3 222 79.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 6.2e-95 351.3 219 82.6
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 6.2e-95 351.3 218 80.7
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 8.1e-95 350.9 223 82.1
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.1e-95 350.9 222 79.7
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.1e-95 350.9 225 78.7
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.1e-94 350.5 222 80.6
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.4e-94 350.1 222 80.2
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.4e-94 350.1 218 80.3
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.4e-94 350.1 221 78.7
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.8e-94 349.7 230 78.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.8e-94 349.7 215 81.4
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 2.3e-94 349.4 222 79.3
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 3.1e-94 349.0 217 81.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.2e-94 348.2 216 81.0
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 6.8e-94 347.8 221 78.7
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 8.9e-94 347.4 215 80.0
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 8.9e-94 347.4 219 79.5
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.2e-93 347.1 218 78.4
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.5e-93 346.7 222 77.5
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.5e-93 346.7 219 79.9
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.5e-93 346.7 221 78.7
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 2.6e-93 345.9 219 79.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.6e-93 345.9 221 82.4
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 9.9e-93 344.0 219 80.4
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.7e-92 343.2 219 79.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 2.2e-92 342.8 225 78.2
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.9e-92 342.4 217 81.1
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 3.8e-92 342.0 222 77.5
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 4.9e-92 341.7 218 77.5
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 5.4e-91 338.2 223 76.7
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 7.1e-91 337.8 223 77.1
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.6e-90 336.7 227 76.2
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 2.7e-90 335.9 219 77.2
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 6.0e-90 334.7 220 75.0
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.0e-89 334.0 221 75.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.4e-83 312.8 222 73.4
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.9e-80 303.1 165 87.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 4.8e-79 298.5 223 69.5
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.1e-78 297.4 227 69.2
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.0e-77 293.1 220 71.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 8.4e-76 287.7 165 86.1
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.1e-75 287.3 195 73.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 6.0e-74 281.6 163 83.4
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.5e-72 276.2 228 66.7
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.3e-72 275.4 222 69.4
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.6e-71 273.5 225 67.1
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.6e-71 272.3 224 65.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.1e-70 269.2 227 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 4.0e-70 268.9 169 76.3
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.5e-69 266.9 221 65.6
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 3.4e-69 265.8 221 67.4
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 2.3e-57 226.5 225 56.9
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 9.7e-48 194.5 190 55.3
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 9.1e-46 188.0 171 57.9
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.6e-45 186.4 127 74.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.9e-44 183.0 141 74.5
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.8e-41 173.7 150 56.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.0e-29 133.7 104 68.3
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.1e-18 95.5 57 86.0
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.4e-17 94.4 58 87.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 6.3e-15 85.5 59 69.5
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 6.3e-15 85.5 59 69.5
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 9.8e-08 61.6 102 40.2


User provided reference genes

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