Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.0e-121 439.1 221 100.0
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 3.2e-119 431.8 221 98.2
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 9.3e-119 430.3 221 97.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 9.3e-119 430.3 221 97.7
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.6e-118 429.5 221 97.7
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.1e-117 424.5 221 96.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.5e-116 422.2 221 95.5
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 2.1e-115 419.1 221 95.0
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.3e-107 393.3 221 88.2
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.6e-107 392.9 221 88.2
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.6e-107 391.7 221 88.2
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 7.6e-105 384.0 218 87.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.7e-104 382.9 221 87.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.1e-103 380.2 218 86.7
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.9e-103 379.4 221 86.0
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.9e-103 379.4 221 84.6
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.4e-103 379.0 218 86.7
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 3.2e-103 378.6 221 85.1
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 9.3e-103 377.1 221 85.5
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 9.3e-103 377.1 220 85.9
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-102 376.7 222 85.1
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.2e-102 376.7 221 85.5
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 2.7e-102 375.6 222 84.2
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 2.7e-102 375.6 221 86.0
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 3.5e-102 375.2 221 85.1
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 3.5e-102 375.2 221 85.1
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 3.5e-102 375.2 221 85.5
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 4.6e-102 374.8 221 83.7
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.0e-102 374.4 222 84.7
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 7.9e-102 374.0 221 83.7
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 7.9e-102 374.0 221 85.1
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 7.9e-102 374.0 221 85.1
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 7.9e-102 374.0 221 85.1
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 7.9e-102 374.0 221 85.5
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 1.0e-101 373.6 220 84.5
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.8e-101 372.9 221 85.1
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.8e-101 372.9 221 84.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.8e-101 372.9 222 84.7
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 85.1
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 82.8
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.9e-101 371.7 221 84.2
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 3.9e-101 371.7 221 84.6
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 3.9e-101 371.7 221 84.2
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 3.9e-101 371.7 221 83.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 83.7
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 5.1e-101 371.3 221 83.3
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 6.7e-101 370.9 221 84.2
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.7e-101 370.9 222 85.1
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 6.7e-101 370.9 220 84.5
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.9e-100 369.4 221 84.2
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.9e-100 369.4 218 83.0
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.3e-100 368.6 218 83.0
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 3.3e-100 368.6 221 84.2
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 4.3e-100 368.2 219 84.5
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 5.6e-100 367.9 221 82.8
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 7.4e-100 367.5 218 82.6
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 9.6e-100 367.1 222 82.4
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-99 366.7 222 84.2
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.6e-99 366.3 218 82.6
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 2.8e-99 365.5 221 82.8
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 2.8e-99 365.5 221 84.6
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.7e-99 365.2 221 81.9
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.7e-99 365.2 218 83.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.7e-99 365.2 221 82.4
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 3.7e-99 365.2 222 83.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 6.2e-99 364.4 223 82.1
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 83.6
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.8e-98 362.8 222 83.8
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.4e-98 362.5 218 83.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.4e-98 362.5 222 82.0
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.4e-98 362.5 221 81.9
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.1e-98 362.1 221 81.4
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 81.0
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 81.0
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 6.9e-98 360.9 218 83.0
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.9e-98 360.9 218 83.0
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.2e-97 360.1 218 83.0
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.5e-97 359.8 222 81.1
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 82.2
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 82.2
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.0e-97 359.4 222 81.5
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.0e-97 359.4 223 81.2
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.6e-97 359.0 218 82.6
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.6e-97 359.0 221 80.5
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 3.4e-97 358.6 222 82.0
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.4e-97 358.6 222 82.4
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 84.1
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 84.1
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 7.6e-97 357.5 219 81.7
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.0e-96 357.1 217 82.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 80.1
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.7e-96 356.3 230 78.3
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.7e-96 356.3 222 79.3
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 82.2
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 79.6
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 2.2e-96 355.9 222 80.2
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 80.3
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 6.5e-96 354.4 222 79.7
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 6.5e-96 354.4 225 80.4
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 8.4e-96 354.0 219 80.4
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.1e-95 353.6 215 81.9
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.9e-95 352.8 221 80.1
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 2.5e-95 352.4 219 80.4
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.5e-95 352.4 219 80.4
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.2e-95 352.1 216 81.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 3.2e-95 352.1 215 81.4
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 4.2e-95 351.7 221 82.8
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 7.1e-95 350.9 219 81.3
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 9.3e-95 350.5 217 83.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.6e-94 349.7 223 81.6
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 1.6e-94 349.7 222 79.3
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.6e-94 349.7 219 80.4
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 223 78.5
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 6.7e-93 344.4 220 76.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 8.7e-93 344.0 223 78.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 221 77.8
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 5.7e-92 341.3 221 76.5
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 5.7e-92 341.3 227 77.5
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 4.8e-91 338.2 219 77.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.9e-84 316.2 222 73.0
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.0e-80 303.9 165 88.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 5.0e-80 301.6 217 72.8
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 5.5e-79 298.1 227 69.2
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.6e-78 296.6 195 75.4
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.6e-78 296.6 220 71.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 5.7e-76 288.1 165 86.7
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 5.3e-74 281.6 163 82.8
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.4e-73 278.9 222 70.3
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.9e-73 278.1 176 79.5
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.1e-71 273.9 172 77.9
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.9e-71 273.1 226 65.5
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.2e-71 271.2 169 78.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.1e-70 269.6 221 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 2.7e-70 269.2 169 76.9
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 4.7e-70 268.5 221 67.9
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 1.4e-58 230.3 218 56.9
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 8.5e-48 194.5 190 55.8
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 4.7e-46 188.7 171 57.9
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.3e-45 186.4 127 74.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.4e-44 182.6 141 75.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 9.2e-42 174.5 150 57.3
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 7.8e-33 144.8 104 72.1
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.2e-20 104.4 57 93.0
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.9e-19 99.0 58 91.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.3e-15 86.3 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.3e-15 86.3 59 71.2
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.9e-07 60.5 102 39.2
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 3.6e-06 56.2 67 47.8


User provided reference genes

Program Settings