Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.7e-149 531.9 266 100.0
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 6.5e-111 404.4 202 99.5
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.6e-109 398.7 202 98.5
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.1e-101 372.9 202 91.1
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.0e-100 369.0 202 89.1
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.0e-100 369.0 202 88.6
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.7e-98 363.2 202 87.1
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.9e-98 361.7 201 88.6
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 5.8e-91 338.2 204 81.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 6.4e-90 334.7 204 79.9
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.3e-87 327.0 197 81.7
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.0e-87 325.9 202 79.7
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.5e-86 323.6 202 76.7
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.9e-86 323.2 201 78.6
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 5.6e-86 321.6 202 78.7
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 9.5e-86 320.9 229 70.3
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 9.5e-86 320.9 201 80.1
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.2e-85 320.5 232 69.4
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 2.1e-85 319.7 202 77.2
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.1e-84 317.4 204 75.5
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 8.9e-84 314.3 191 78.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.6e-83 312.8 202 75.2
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.2e-82 309.7 202 76.7
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 6.4e-82 308.1 199 73.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 6.4e-82 308.1 202 74.8
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.1e-81 307.4 202 77.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 2.4e-81 306.2 204 76.0
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 3.2e-81 305.8 192 76.0
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.5e-80 302.4 203 74.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 1.1e-78 297.4 220 70.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.1e-78 297.4 205 74.1
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.1e-78 297.4 203 72.4
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.1e-78 297.4 202 73.8
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.1e-78 297.4 202 73.8
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.5e-78 296.2 215 70.2
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 2.5e-78 296.2 216 69.0
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.5e-78 296.2 203 72.9
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 9.5e-78 294.3 209 72.2
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.5e-78 294.3 202 73.8
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.5e-78 294.3 204 73.5
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 9.5e-78 294.3 236 65.3
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.6e-77 292.4 202 71.8
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 8.1e-77 291.2 203 73.4
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.1e-76 290.8 202 73.3
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 3.1e-76 289.3 205 71.2
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 4.0e-76 288.9 204 72.1
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.2e-76 288.5 206 71.8
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 8.9e-76 287.7 218 68.8
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.6e-75 286.2 206 71.4
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.6e-75 286.2 205 70.7
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 7.6e-75 284.6 202 71.3
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 9.9e-75 284.3 203 70.9
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.3e-74 283.9 202 72.3
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.3e-74 283.9 201 71.1
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.3e-74 283.9 217 66.4
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.2e-74 283.1 207 69.1
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.9e-74 282.7 195 71.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.9e-74 282.7 205 69.3
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 3.8e-74 282.3 202 70.8
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.8e-74 282.3 217 65.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.8e-74 282.3 217 65.9
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 3.8e-74 282.3 202 70.3
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 4.9e-74 282.0 207 70.0
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.9e-73 280.0 205 70.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.9e-73 280.0 202 69.3
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.9e-73 280.0 202 68.3
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 2.4e-73 279.6 202 69.3
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 3.2e-73 279.3 202 67.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 4.1e-73 278.9 202 68.3
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 5.4e-73 278.5 222 65.8
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 5.4e-73 278.5 203 70.4
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 5.4e-73 278.5 210 67.6
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 7.1e-73 278.1 202 68.3
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 7.1e-73 278.1 212 67.0
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 9.2e-73 277.7 192 69.8
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.6e-72 276.9 172 76.2
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.1e-72 276.6 205 69.8
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.7e-72 276.2 204 70.1
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.7e-72 276.2 198 68.2
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 3.5e-72 275.8 202 67.8
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 3.5e-72 275.8 215 65.6
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 3.5e-72 275.8 207 69.1
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 7.8e-72 274.6 202 67.3
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.3e-71 273.9 205 65.9
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.3e-71 273.9 212 66.0
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.7e-71 273.5 212 64.2
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.9e-71 272.3 171 76.6
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.1e-71 271.9 208 63.0
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 8.6e-71 271.2 195 66.7
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.1e-70 270.8 170 75.3
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 4.3e-70 268.9 209 62.7
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 4.3e-70 268.9 191 69.6
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 5.6e-70 268.5 209 62.7
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 5.6e-70 268.5 209 62.7
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 5.6e-70 268.5 214 66.4
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 5.6e-70 268.5 256 58.2
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 7.3e-70 268.1 209 62.7
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 7.3e-70 268.1 209 62.7
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 2.1e-69 266.5 209 62.2
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.8e-69 266.2 205 62.9
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 4.7e-69 265.4 209 61.7
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 4.7e-69 265.4 208 62.0
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 6.2e-69 265.0 215 63.3
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.4e-68 263.8 178 74.2
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.4e-68 263.8 170 72.4
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.4e-68 263.8 170 72.4
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.5e-67 260.4 220 61.8
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 2.6e-67 259.6 171 71.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 4.4e-67 258.8 204 64.2
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 7.6e-67 258.1 210 62.4
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 8.4e-66 254.6 188 66.5
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.9e-65 253.4 248 57.7
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.9e-65 253.4 248 57.7
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.9e-65 253.4 179 70.4
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 3.2e-65 252.7 207 61.4
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.0e-63 247.7 207 60.4
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 5.1e-63 245.4 205 57.6
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 5.1e-63 245.4 202 60.9
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.9e-62 243.4 197 58.9
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 8.1e-61 238.0 203 66.0
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 6.9e-60 235.0 184 65.2
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.1e-57 227.6 195 60.0
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.3e-55 219.9 131 79.4
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.6e-53 213.8 130 78.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.8e-52 210.3 131 76.3
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.5e-51 207.2 140 70.0
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 9.9e-51 204.5 152 72.4
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 2.4e-49 199.9 159 60.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 7.1e-49 198.4 140 70.0
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.0e-47 194.5 158 53.8
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.8e-45 186.4 202 46.0
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.8e-44 183.7 171 52.0
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 3.1e-44 183.0 131 69.5
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 9.3e-41 171.4 196 43.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 2.3e-39 166.8 149 49.0
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 3.0e-39 166.4 123 68.3
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 6.7e-39 165.2 110 71.8
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 4.3e-38 162.5 220 45.9
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 4.8e-37 159.1 130 56.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 4.5e-35 152.5 160 46.2
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 3.8e-34 149.4 144 46.5
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.4e-31 141.0 194 41.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 5.1e-31 139.0 170 40.6
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.9e-30 137.1 94 68.1
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 6.3e-29 132.1 92 71.7
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 2.8e-21 106.7 159 36.5
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 7.2e-17 92.0 61 63.9
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 9.4e-17 91.7 76 56.6
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 1.6e-16 90.9 49 83.7
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 6.1e-16 89.0 65 66.2
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 3.0e-15 86.7 76 52.6
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 8.8e-15 85.1 49 77.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.5e-14 84.3 69 56.5
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.5e-14 84.3 49 79.6
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.4e-12 77.0 76 55.3
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 2.9e-10 70.1 76 51.3
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 9.4e-09 65.1 55 60.0
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 1.2e-08 64.7 38 78.9
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 4.7e-08 62.8 91 35.2
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 6.1e-08 62.4 42 59.5
Gohir.A12G080400 Gossypium hirsutum HOM05D000285 ORTHO05D000241 2.3e-07 60.5 99 33.3
vmacro02513 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 6.7e-07 58.9 74 39.2
Prupe.7G108900 Prunus persica HOM05D001873 ORTHO05D001976 1.2e-06 58.2 106 29.2
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 1.5e-06 57.8 66 40.9
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 1.5e-06 57.8 44 63.6
Prupe.6G216700 Prunus persica HOM05D000285 ORTHO05D000241 2.6e-06 57.0 103 35.0
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 3.3e-06 56.6 67 40.3
PSO063G7338 Papaver somniferum HOM05D004585 ORTHO05D302184 3.3e-06 56.6 127 33.9
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.4e-06 56.2 96 30.2
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 4.4e-06 56.2 86 33.7
FAN09G0313 Fragaria x ananassa HOM05D001873 ORTHO05D001976 5.7e-06 55.8 94 30.9
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 5.7e-06 55.8 29 86.2
Migut.N02120 Erythranthe guttata HOM05D001495 ORTHO05D001391 7.5e-06 55.5 74 37.8
Gohir.A03G160050 Gossypium hirsutum HOM05D000285 ORTHO05D000241 7.5e-06 55.5 95 31.6
Gohir.D02G183200 Gossypium hirsutum HOM05D000285 ORTHO05D000241 7.5e-06 55.5 95 31.6
Gorai.005G205600 Gossypium raimondii HOM05D000285 ORTHO05D000241 7.5e-06 55.5 95 31.6
unitig_61.g26147 Utricularia gibba HOM05D001495 ORTHO05D001391 7.5e-06 55.5 147 29.9
FAN15G1856 Fragaria x ananassa HOM05D001495 ORTHO05D001391 9.7e-06 55.1 74 37.8
FAN20G2774 Fragaria x ananassa HOM05D001495 ORTHO05D001391 9.7e-06 55.1 74 37.8
FAN24G0914 Fragaria x ananassa HOM05D001495 ORTHO05D001391 9.7e-06 55.1 74 37.8
FAN27G2946 Fragaria x ananassa HOM05D001495 ORTHO05D001391 9.7e-06 55.1 74 37.8


User provided reference genes

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