Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g068180.3 Solanum lycopersicum HOM05D001442 ORTHO05D001369 4.1e-30 134.0 66 100.0
PGSC0003DMG402028532 Solanum tuberosum HOM05D001442 ORTHO05D001369 7.5e-24 113.2 64 85.9
Sopen06g025450 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-22 109.4 60 90.0
Nitab4.5_0006769g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 2.8e-15 84.7 68 64.7
Nitab4.5_0000373g0070 Nicotiana tabacum HOM05D001442 ORTHO05D001369 3.7e-15 84.3 68 64.7
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 3.7e-15 84.3 66 68.2
Nitab4.5_0003157g0030 Nicotiana tabacum HOM05D001442 ORTHO05D001369 1.0e-12 76.3 67 61.2
Nitab4.5_0013167g0010 Nicotiana tabacum HOM05D001442 ORTHO05D001369 1.7e-12 75.5 67 61.2
MSTRG.4703 Avicennia marina HOM05D001442 ORTHO05D001369 3.9e-12 74.3 69 62.3
Peaxi162Scf00332g00633 Petunia axillaris HOM05D001442 ORTHO05D001369 8.6e-12 73.2 67 65.7
Solyc03g116780.3 Solanum lycopersicum HOM05D001442 ORTHO05D001369 1.1e-11 72.8 66 62.1
Dinv38127 Davidia involucrata HOM05D001442 ORTHO05D001369 1.5e-11 72.4 66 62.1
Sopen03g035700 Solanum pennellii HOM05D001442 ORTHO05D001369 2.5e-11 71.6 66 60.6
PGSC0003DMG400000623 Solanum tuberosum HOM05D001442 ORTHO05D001369 2.5e-11 71.6 66 60.6
Rhsim08G0212300 Rhododendron simsii HOM05D001442 ORTHO05D001369 4.3e-11 70.9 66 60.6
Sopen06g013960 Solanum pennellii HOM05D001442 ORTHO05D001369 5.6e-11 70.5 66 59.1
TAR626G0058 Trochodendron aralioides HOM05D001442 ORTHO05D001369 5.6e-11 70.5 77 50.6
Dinv30614 Davidia involucrata HOM05D001442 ORTHO05D001369 7.3e-11 70.1 66 59.1
Oeu060113.1 Olea europaea HOM05D001442 ORTHO05D001369 1.6e-10 68.9 67 59.7
Oeu060114.1 Olea europaea HOM05D001442 ORTHO05D001369 1.6e-10 68.9 67 59.7
CSS0048410 Camellia sinensis var. sinensis HOM05D001442 ORTHO05D001369 2.1e-10 68.6 66 57.6
Sp1g25410 Schrenkiella parvula HOM05D001442 ORTHO05D001369 3.6e-10 67.8 66 56.1
GSVIVG01015583001 Vitis vinifera HOM05D001442 ORTHO05D001369 3.6e-10 67.8 77 53.2
AL7G43590 Arabidopsis lyrata HOM05D001442 ORTHO05D001369 4.7e-10 67.4 68 55.9
Cc04_g04470 Coffea canephora HOM05D001442 ORTHO05D001369 4.7e-10 67.4 64 57.8
THA.LOC104808967 Tarenaya hassleriana HOM05D001442 ORTHO05D001369 4.7e-10 67.4 68 55.9
Dinv36483 Davidia involucrata HOM05D001442 ORTHO05D001369 8.0e-10 66.6 81 51.9
vmacro19005 Vaccinium macrocarpon HOM05D001442 ORTHO05D001369 1.0e-09 66.2 66 59.1
CARHR217130 Cardamine hirsuta HOM05D001442 ORTHO05D001369 1.8e-09 65.5 69 56.5
Thhalv10003459m.g Eutrema salsugineum HOM05D001442 ORTHO05D001369 1.8e-09 65.5 68 54.4
SalBow2G0910 Salvia bowleyana HOM05D001442 ORTHO05D001369 1.8e-09 65.5 69 55.1
DCAR_021350 Daucus carota HOM05D001442 ORTHO05D001369 2.3e-09 65.1 66 57.6
Lsat_1_v5_gn_4_87681 Lactuca sativa HOM05D001442 ORTHO05D001369 2.3e-09 65.1 73 53.4
THA.LOC104826550 Tarenaya hassleriana HOM05D001442 ORTHO05D001369 2.3e-09 65.1 68 52.9
Atru.chr7.1945 Acer truncatum HOM05D001442 ORTHO05D001369 3.1e-09 64.7 75 46.7
Lsat_1_v5_gn_5_131461 Lactuca sativa HOM05D001442 ORTHO05D001369 3.1e-09 64.7 66 59.1
Lj5A74G66 Lonicera japonica HOM05D001442 ORTHO05D001369 3.1e-09 64.7 65 58.5
Manes.06G047900 Manihot esculenta HOM05D001442 ORTHO05D001369 3.1e-09 64.7 79 48.1
TWI63G0119 Tripterygium wilfordii HOM05D001442 ORTHO05D001369 3.1e-09 64.7 68 51.5
TAR636G3292 Trochodendron aralioides HOM05D001442 ORTHO05D001369 3.1e-09 64.7 80 46.2
Migut.D01082 Erythranthe guttata HOM05D001442 ORTHO05D001369 4.0e-09 64.3 69 55.1
HanXRQChr10g0302841 Helianthus annuus HOM05D001442 ORTHO05D001369 4.0e-09 64.3 66 57.6
TAR625G1306 Trochodendron aralioides HOM05D001442 ORTHO05D001369 4.0e-09 64.3 80 51.2
Ciclev10009395m.g Citrus clementina HOM05D001442 ORTHO05D001369 6.8e-09 63.5 66 53.0
HanXRQChr12g0361571 Helianthus annuus HOM05D001442 ORTHO05D001369 6.8e-09 63.5 66 56.1
TWI34G1608 Tripterygium wilfordii HOM05D001442 ORTHO05D001369 6.8e-09 63.5 68 51.5
AUR62011511 Chenopodium quinoa HOM05D001442 ORTHO05D001369 8.9e-09 63.2 69 52.2
AUR62016330 Chenopodium quinoa HOM05D001442 ORTHO05D001369 8.9e-09 63.2 69 52.2
Cc06_g08120 Coffea canephora HOM05D001442 ORTHO05D001369 1.2e-08 62.8 87 43.7
HanXRQChr02g0058601 Helianthus annuus HOM05D001442 ORTHO05D001369 1.2e-08 62.8 68 55.9
Peaxi162Scf00207g00632 Petunia axillaris HOM05D001442 ORTHO05D001369 1.2e-08 62.8 64 53.1
SalBow6G3520 Salvia bowleyana HOM05D001442 ORTHO05D001369 1.2e-08 62.8 68 54.4
Hund09279 Selenicereus undatus HOM05D001442 ORTHO05D001369 1.2e-08 62.8 69 53.6
Hund09281 Selenicereus undatus HOM05D001442 ORTHO05D001369 1.2e-08 62.8 69 53.6
Actinidia08794 Actinidia chinensis HOM05D001442 ORTHO05D001369 1.5e-08 62.4 66 57.6
COL.COLO4_11931 Corchorus olitorius HOM05D001442 ORTHO05D001369 1.5e-08 62.4 63 55.6
Actinidia38725 Actinidia chinensis HOM05D001442 ORTHO05D001369 2.0e-08 62.0 85 47.1
ClCG11G003300 Citrullus lanatus HOM05D001442 ORTHO05D001369 2.6e-08 61.6 80 45.0
MELO3C004464.2 Cucumis melo HOM05D001442 ORTHO05D001369 2.6e-08 61.6 80 46.2
CsaV3_2G003120 Cucumis sativus L. HOM05D001442 ORTHO05D001369 2.6e-08 61.6 80 46.2
Actinidia15755 Actinidia chinensis HOM05D001442 ORTHO05D001369 3.4e-08 61.2 65 55.4
SalBow6G6042 Salvia bowleyana HOM05D001442 ORTHO05D001369 3.4e-08 61.2 68 52.9
Dinv41479 Davidia involucrata HOM05D001442 ORTHO05D001369 4.4e-08 60.8 81 49.4
Hma1.2p1_0242F.1_g100650 Hydrangea macrophylla HOM05D001442 ORTHO05D001369 4.4e-08 60.8 70 58.6
MSTRG.22752 Avicennia marina HOM05D001442 ORTHO05D001369 5.8e-08 60.5 70 52.9
Potri.006G066000 Populus trichocarpa HOM05D001442 ORTHO05D001369 5.8e-08 60.5 83 43.4
Potri.018G127200 Populus trichocarpa HOM05D001442 ORTHO05D001369 5.8e-08 60.5 83 43.4
vmacro06153 Vaccinium macrocarpon HOM05D001442 ORTHO05D001369 5.8e-08 60.5 80 47.5
Ah.01g006580 Amaranthus hybridus HOM05D001442 ORTHO05D001369 7.5e-08 60.1 66 51.5
Rhsim03G0251000 Rhododendron simsii HOM05D001442 ORTHO05D001369 7.5e-08 60.1 59 59.3
Sc18g0000390 Simmondsia chinensis HOM05D001442 ORTHO05D001369 9.8e-08 59.7 68 50.0
Sabra06G0048700 Salix brachista HOM05D001442 ORTHO05D001369 1.3e-07 59.3 84 41.7
PGSC0003DMG400030911 Solanum tuberosum HOM05D001442 ORTHO05D001369 1.3e-07 59.3 68 54.4
Actinidia26373 Actinidia chinensis HOM05D001442 ORTHO05D001369 1.7e-07 58.9 85 44.7
EL10Ac9g21878 Beta vulgaris HOM05D001442 ORTHO05D001369 1.7e-07 58.9 71 45.1
Cpa.g.sc46.37 Carica papaya HOM05D001442 ORTHO05D001369 1.7e-07 58.9 73 47.9
Sed0025644 Sechium edule HOM05D001442 ORTHO05D001369 1.7e-07 58.9 82 42.7
Sopen07g003840 Solanum pennellii HOM05D001442 ORTHO05D001369 1.7e-07 58.9 68 54.4
Nn2g12102 Nelumbo nucifera HOM05D001442 ORTHO05D001369 2.2e-07 58.5 79 45.6
Solyc07g007960.3 Solanum lycopersicum HOM05D001442 ORTHO05D001369 2.2e-07 58.5 68 52.9
PGSC0003DMG400028628 Solanum tuberosum HOM05D001442 ORTHO05D001369 2.2e-07 58.5 67 52.2
Aa31LG8G12250 Aethionema arabicum HOM05D001442 ORTHO05D001369 2.9e-07 58.2 67 49.3
Oeu027843.2 Olea europaea HOM05D001442 ORTHO05D001369 2.9e-07 58.2 67 53.7
Sabra18G0107900 Salix brachista HOM05D001442 ORTHO05D001369 2.9e-07 58.2 79 43.0
CSS0043632 Camellia sinensis var. sinensis HOM05D001442 ORTHO05D001369 3.7e-07 57.8 79 46.8
CAN.G47.23 Capsicum annuum HOM05D001442 ORTHO05D001369 3.7e-07 57.8 65 52.3
Migut.I00755 Erythranthe guttata HOM05D001442 ORTHO05D001369 3.7e-07 57.8 66 56.1
Nn8g39531 Nelumbo nucifera HOM05D001442 ORTHO05D001438 3.7e-07 57.8 92 41.3
Duzib235G1279 Durio zibethinus HOM05D001442 ORTHO05D001369 6.4e-07 57.0 66 56.1
ECA232G2693 Erigeron canadensis HOM05D001442 ORTHO05D001369 8.3e-07 56.6 64 53.1
SHI29283 Sapria himalayana HOM05D001442 ORTHO05D001369 8.3e-07 56.6 72 45.8
Cpa.g.sc1915.1 Carica papaya HOM05D001442 ORTHO05D001369 1.1e-06 56.2 66 48.5
ECA234G4832 Erigeron canadensis HOM05D001442 ORTHO05D001369 1.1e-06 56.2 70 51.4
Gohir.A06G117100 Gossypium hirsutum HOM05D001442 ORTHO05D001369 1.1e-06 56.2 66 56.1
Gohir.D06G120400 Gossypium hirsutum HOM05D001442 ORTHO05D001369 1.1e-06 56.2 66 56.1
MSTRG.11147 Avicennia marina HOM05D001442 ORTHO05D001369 1.4e-06 55.8 69 49.3
Nn3g21775 Nelumbo nucifera HOM05D037026 ORTHO05D001369 1.4e-06 55.8 81 45.7
Aa31LG8G12240 Aethionema arabicum HOM05D001442 ORTHO05D001369 1.9e-06 55.5 67 49.3
DCAR_020885 Daucus carota HOM05D001442 ORTHO05D001369 1.9e-06 55.5 72 50.0
Gorai.010G140800 Gossypium raimondii HOM05D001442 ORTHO05D001369 1.9e-06 55.5 66 56.1
Hma1.2p1_0343F.1_g130980 Hydrangea macrophylla HOM05D001442 ORTHO05D001369 1.9e-06 55.5 70 52.9
Nitab4.5_0005658g0010 Nicotiana tabacum HOM05D001442 ORTHO05D001369 1.9e-06 55.5 79 45.6
Aqoxy7G03641 Aquilegia oxysepala HOM05D001442 ORTHO05D001369 2.4e-06 55.1 83 39.8
arahy.Tifrunner.gnm1.ann1.7YRF18 Arachis hypogaea HOM05D001442 ORTHO05D001369 2.4e-06 55.1 66 53.0
arahy.Tifrunner.gnm1.ann1.QMVE3T Arachis hypogaea HOM05D001442 ORTHO05D001369 2.4e-06 55.1 66 53.0
Thecc.06G029000 Theobroma cacao HOM05D001442 ORTHO05D001369 3.2e-06 54.7 66 56.1
arahy.Tifrunner.gnm1.ann1.F7S1IB Arachis hypogaea HOM05D001442 ORTHO05D001369 4.1e-06 54.3 68 50.0
MSTRG.10664 Avicennia marina HOM05D001442 ORTHO05D001369 4.1e-06 54.3 73 46.6
Cfa003419 Carpinus fangiana HOM05D001442 ORTHO05D001369 4.1e-06 54.3 71 45.1
Lj3g0012489 Lotus japonicus HOM05D001442 ORTHO05D001369 4.1e-06 54.3 67 53.7
CANSAT56G2963 Cannabis sativa HOM05D001442 ORTHO05D001369 5.4e-06 53.9 67 52.2
Lsat_1_v5_gn_7_44280 Lactuca sativa HOM05D001442 ORTHO05D001369 5.4e-06 53.9 69 49.3
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 5.4e-06 53.9 79 44.3
Sopen12g021930 Solanum pennellii HOM05D001442 ORTHO05D001369 5.4e-06 53.9 67 50.7
SGA_v2.0_scaffold109G31061 Striga asiatica HOM05D001442 ORTHO05D001369 5.4e-06 53.9 75 50.7
vmacro16890 Vaccinium macrocarpon HOM05D001442 ORTHO05D001369 5.4e-06 53.9 73 54.8
Haze_25513 Corylus avellana HOM05D001442 ORTHO05D001369 7.0e-06 53.5 71 45.1
Nitab4.5_0004513g0020 Nicotiana tabacum HOM05D001442 ORTHO05D001369 7.0e-06 53.5 78 44.9
SGA_v2.0_scaffold307G48039 Striga asiatica HOM05D001442 ORTHO05D001369 7.0e-06 53.5 70 50.0


User provided reference genes

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