Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.8e-78 295.8 147 100.0
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.9e-59 232.6 158 77.8
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 4.6e-58 228.0 158 77.8
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.0e-57 226.9 156 77.6
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.3e-57 225.7 158 77.2
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.9e-56 222.6 158 76.6
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.3e-56 221.9 156 76.3
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 4.8e-55 218.0 158 74.1
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.4e-48 194.9 159 67.9
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.8e-46 189.5 158 63.9
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.1e-46 188.3 158 63.3
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.3e-46 188.0 159 66.0
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 7.0e-46 187.6 159 63.5
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.6e-45 185.7 158 65.2
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.2e-44 182.6 163 62.6
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.9e-44 182.2 162 61.1
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 5.0e-44 181.4 163 60.1
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 6.5e-44 181.0 160 61.9
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-43 180.3 163 61.3
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-43 180.3 163 62.0
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 1.1e-43 180.3 178 57.3
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 2.5e-43 179.1 156 62.2
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 3.2e-43 178.7 155 67.7
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 3.2e-43 178.7 159 63.5
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 5.5e-43 177.9 154 63.6
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 5.5e-43 177.9 177 58.2
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.2e-42 176.8 161 59.6
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 6.1e-42 174.5 159 62.3
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 8.0e-42 174.1 153 62.1
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 8.0e-42 174.1 153 62.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.3e-41 172.6 154 59.1
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.0e-41 172.2 157 61.1
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 3.0e-41 172.2 164 56.1
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 3.0e-41 172.2 156 62.2
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 6.7e-41 171.0 156 60.3
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 8.8e-41 170.6 153 60.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 3.3e-40 168.7 158 56.3
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 4.4e-40 168.3 162 58.0
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 5.7e-40 167.9 179 54.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 5.7e-40 167.9 163 57.7
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.4e-40 167.5 159 56.6
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.3e-39 166.8 153 58.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.7e-39 166.4 158 59.5
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.2e-39 166.0 156 57.7
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.2e-39 166.0 160 55.6
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.2e-39 166.0 160 58.1
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 3.7e-39 165.2 161 55.9
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 3.7e-39 165.2 153 60.1
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 6.3e-39 164.5 161 57.8
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.1e-38 163.7 157 57.3
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.1e-38 162.2 160 57.5
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 3.1e-38 162.2 161 57.1
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.1e-38 161.8 160 57.5
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 5.3e-38 161.4 160 56.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 5.3e-38 161.4 163 56.4
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 7.0e-38 161.0 162 54.3
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 9.1e-38 160.6 164 55.5
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 9.1e-38 160.6 158 56.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-37 160.2 158 55.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.6e-37 159.8 156 55.1
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.0e-37 159.5 157 56.7
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.0e-37 159.5 158 55.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.0e-37 159.5 158 57.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.6e-37 159.1 155 58.1
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 3.5e-37 158.7 155 58.1
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 3.5e-37 158.7 159 54.7
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 7.7e-37 157.5 158 55.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 7.7e-37 157.5 158 55.7
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 7.7e-37 157.5 161 56.5
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.0e-36 157.1 159 57.9
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.2e-36 156.0 171 51.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 2.2e-36 156.0 159 54.1
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 6.5e-36 154.5 157 50.3
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 6.5e-36 154.5 160 53.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.1e-35 153.7 158 55.7
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.1e-35 153.7 151 57.0
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.9e-35 152.9 160 53.8
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 2.5e-35 152.5 161 54.0
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 4.2e-35 151.8 164 53.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 4.2e-35 151.8 155 58.1
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 4.2e-35 151.8 160 50.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.5e-35 151.4 177 51.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.2e-35 151.0 175 50.3
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 9.4e-35 150.6 158 54.4
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.6e-34 149.8 160 52.5
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.7e-34 149.1 159 52.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 4.7e-34 148.3 174 49.4
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 6.1e-34 147.9 162 53.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 6.1e-34 147.9 166 51.2
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 6.1e-34 147.9 163 51.5
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 8.0e-34 147.5 163 52.8
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 8.0e-34 147.5 163 52.8
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 8.0e-34 147.5 161 53.4
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.0e-33 147.1 159 52.8
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.4e-33 146.7 162 53.1
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.4e-33 146.7 160 53.8
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.4e-33 146.7 160 49.4
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.8e-33 146.4 174 48.9
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.3e-33 146.0 163 52.1
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.3e-33 146.0 162 53.7
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 3.0e-33 145.6 171 46.8
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.0e-33 145.2 162 53.1
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 4.0e-33 145.2 164 51.8
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 5.2e-33 144.8 163 52.1
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 6.7e-33 144.4 176 51.1
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 6.7e-33 144.4 159 52.2
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-32 143.7 162 53.1
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-32 143.7 163 51.5
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.5e-32 143.3 162 52.5
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.5e-32 143.3 162 52.5
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 4.4e-32 141.7 162 51.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 2.4e-30 136.0 224 40.2
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 4.1e-30 135.2 161 50.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 8.0e-26 120.9 163 47.2
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.4e-25 120.2 180 43.9
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.0e-24 116.3 185 42.2
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 4.4e-24 115.2 122 50.0
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.7e-23 112.1 124 55.6
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 3.7e-23 112.1 185 36.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.9e-20 102.4 106 53.8
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 6.3e-15 84.7 123 43.1
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.9e-12 75.9 159 33.3
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.6e-10 70.1 78 41.0
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 2.8e-10 69.3 67 53.7
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 8.0e-10 67.8 226 27.4
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 3.2e-06 55.8 39 69.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 4.1e-06 55.5 35 71.4


User provided reference genes

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