Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 3.8e-60 234.6 114 100.0
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.3e-39 166.4 134 65.7
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 1.0e-36 156.8 105 75.2
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 1.1e-22 110.2 126 50.0
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 2.3e-20 102.4 132 48.5
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 3.9e-20 101.7 129 46.5
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.1e-20 101.3 131 49.6
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 8.7e-20 100.5 131 49.6
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.3e-18 96.7 105 50.5
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 6.2e-18 94.4 93 51.6
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 8.1e-18 94.0 83 56.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.4e-17 93.2 142 40.8
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 3.1e-17 92.0 137 38.7
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 3.1e-17 92.0 104 46.2
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 4.0e-17 91.7 121 43.8
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 4.0e-17 91.7 96 55.2
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.3e-17 91.3 135 40.0
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 6.9e-17 90.9 82 54.9
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 6.9e-17 90.9 82 54.9
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 6.9e-17 90.9 101 49.5
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 6.9e-17 90.9 130 46.9
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.5e-16 89.7 73 61.6
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.5e-16 89.7 130 46.2
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.5e-16 89.7 103 45.6
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.6e-16 89.0 119 46.2
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 2.6e-16 89.0 141 40.4
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 3.4e-16 88.6 69 65.2
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.5e-16 88.2 135 38.5
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 4.5e-16 88.2 101 45.5
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 7.6e-16 87.4 127 43.3
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 7.6e-16 87.4 116 44.0
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.3e-15 86.7 70 60.0
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.3e-15 86.7 98 50.0
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.2e-15 85.9 63 68.3
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.2e-15 85.9 63 68.3
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 2.9e-15 85.5 116 43.1
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 2.9e-15 85.5 74 54.1
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 3.8e-15 85.1 86 54.7
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 4.9e-15 84.7 130 39.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 6.4e-15 84.3 72 56.9
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 6.4e-15 84.3 130 40.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 6.4e-15 84.3 69 60.9
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 8.4e-15 84.0 104 48.1
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-14 83.6 92 48.9
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 1.4e-14 83.2 96 47.9
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.9e-14 82.8 103 43.7
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.9e-14 82.8 105 42.9
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.4e-14 82.4 126 43.7
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 3.2e-14 82.0 74 51.4
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 3.2e-14 82.0 92 47.8
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 3.2e-14 82.0 108 42.6
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 3.2e-14 82.0 70 61.4
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 4.2e-14 81.6 110 41.8
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 4.2e-14 81.6 75 52.0
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.4e-14 81.3 107 43.9
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.4e-14 81.3 104 43.3
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 5.4e-14 81.3 89 44.9
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 7.1e-14 80.9 137 35.0
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 7.1e-14 80.9 131 40.5
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 7.1e-14 80.9 99 44.4
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 7.1e-14 80.9 139 36.0
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 7.1e-14 80.9 76 48.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 9.3e-14 80.5 69 55.1
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 9.3e-14 80.5 87 49.4
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.2e-13 80.1 140 36.4
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.2e-13 80.1 68 58.8
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-13 80.1 102 45.1
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.2e-13 80.1 110 40.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.2e-13 80.1 83 45.8
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.6e-13 79.7 76 52.6
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.6e-13 79.7 101 40.6
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.6e-13 79.7 101 40.6
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-13 79.3 76 52.6
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-13 79.3 76 52.6
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 4.6e-13 78.2 101 43.6
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.0e-13 77.8 76 51.3
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 6.0e-13 77.8 88 46.6
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 6.0e-13 77.8 106 42.5
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.9e-13 77.4 76 51.3
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 7.9e-13 77.4 65 55.4
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.0e-12 77.0 139 33.1
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.0e-12 77.0 79 48.1
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.8e-12 76.3 111 43.2
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.8e-12 76.3 113 40.7
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.8e-12 76.3 104 39.4
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.8e-12 76.3 72 50.0
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.8e-12 76.3 84 50.0
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.8e-12 76.3 90 47.8
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.8e-12 76.3 101 43.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 2.3e-12 75.9 72 50.0
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 2.3e-12 75.9 114 40.4
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.3e-12 75.9 70 51.4
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 3.0e-12 75.5 66 53.0
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.9e-12 75.1 130 36.2
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 3.9e-12 75.1 117 39.3
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 3.9e-12 75.1 112 40.2
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 3.9e-12 75.1 67 52.2
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 3.9e-12 75.1 71 49.3
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 5.1e-12 74.7 112 40.2
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 5.1e-12 74.7 112 40.2
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 5.1e-12 74.7 112 40.2
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 5.1e-12 74.7 99 41.4
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 5.1e-12 74.7 67 53.7
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 8.7e-12 73.9 62 58.1
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 8.7e-12 73.9 62 58.1
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 8.7e-12 73.9 144 37.5
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 1.1e-11 73.6 67 52.2
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.9e-11 72.8 112 40.2
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.9e-11 72.8 113 37.2
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 2.5e-11 72.4 102 42.2
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 2.5e-11 72.4 100 40.0
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 2.5e-11 72.4 59 61.0
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 3.3e-11 72.0 62 53.2
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 5.6e-11 71.2 72 47.2
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 5.6e-11 71.2 81 45.7
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 5.6e-11 71.2 108 40.7
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 9.6e-11 70.5 67 50.7
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 2.1e-10 69.3 124 35.5
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 2.1e-10 69.3 84 44.0
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 2.1e-10 69.3 57 59.6
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 2.8e-10 68.9 74 43.2
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 3.6e-10 68.6 76 43.4
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 3.6e-10 68.6 70 45.7
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.8e-10 68.2 137 37.2
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 8.1e-10 67.4 136 33.8
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.8e-09 66.2 62 50.0
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 1.8e-09 66.2 65 49.2
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.4e-09 65.9 77 44.2
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.4e-09 65.9 77 44.2
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.4e-09 65.9 77 44.2
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 2.4e-09 65.9 137 34.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.4e-09 65.9 99 39.4
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 6.9e-09 64.3 80 46.2
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.2e-08 63.5 74 41.9
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.2e-08 63.5 74 41.9
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.2e-08 63.5 60 50.0
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 2.0e-08 62.8 73 41.1
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 9.9e-08 60.5 55 50.9
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.3e-07 60.1 87 39.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.9e-07 58.9 67 44.8
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.9e-07 58.9 67 44.8
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 3.8e-07 58.5 41 65.9
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 4.9e-07 58.2 69 43.5
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.1e-06 57.0 51 54.9
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 1.1e-06 57.0 68 44.1
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 7.1e-06 54.3 137 32.8


User provided reference genes

Program Settings