Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g033820.2 Solanum lycopersicum HOM05D029645 ORTHO05D013283 1.6e-98 362.8 197 100.0
Sopen07g026340 Solanum pennellii HOM05D001837 ORTHO05D013283 3.2e-30 136.0 185 46.5
Solyc06g048380.3 Solanum lycopersicum HOM05D001837 ORTHO05D013283 5.5e-30 135.2 190 45.8
Sopen06g014200 Solanum pennellii HOM05D004532 ORTHO05D013283 7.9e-29 131.3 82 80.5
Sopen07g026330 Solanum pennellii HOM05D001837 ORTHO05D013283 1.0e-28 131.0 193 44.6
PGSC0003DMG400045842 Solanum tuberosum HOM05D001837 ORTHO05D013283 1.0e-28 131.0 193 42.5
Sopen06g014530 Solanum pennellii HOM05D004532 ORTHO05D013283 1.5e-27 127.1 184 44.0
Solyc07g052700.3 Solanum lycopersicum HOM05D000042 ORTHO05D013283 5.7e-27 125.2 193 42.0
Peaxi162Scf00007g01333 Petunia axillaris HOM05D000042 ORTHO05D013283 2.8e-26 122.9 218 39.4
Solyc07g052720.4 Solanum lycopersicum HOM05D000042 ORTHO05D000028 2.2e-23 113.2 101 59.4
PGSC0003DMG403026197 Solanum tuberosum HOM05D001837 ORTHO05D000028 3.9e-20 102.4 90 58.9
Sopen01g011170 Solanum pennellii HOM05D001837 ORTHO05D013283 7.4e-19 98.2 88 59.1
PGSC0003DMG401026197 Solanum tuberosum HOM05D000042 ORTHO05D013283 7.4e-19 98.2 193 34.2
Solyc06g033830.1 Solanum lycopersicum HOM05D000042 ORTHO05D000028 6.3e-18 95.1 190 35.8
Sopen06g014360 Solanum pennellii HOM05D000006 ORTHO05D000001 1.1e-17 94.4 61 78.7
Migut.H01211 Erythranthe guttata HOM05D001837 ORTHO05D000028 4.1e-17 92.4 196 35.7
CAN.G86.18 Capsicum annuum HOM05D000042 ORTHO05D000028 5.9e-16 88.6 89 51.7
CAN.G86.20 Capsicum annuum HOM05D000042 ORTHO05D013283 7.7e-16 88.2 200 35.0
Nitab4.5_0002949g0060 Nicotiana tabacum HOM05D000042 ORTHO05D000028 1.3e-15 87.4 80 55.0
Nitab4.5_0004036g0060 Nicotiana tabacum HOM05D000042 ORTHO05D013283 1.3e-15 87.4 80 55.0
MSTRG.14156 Avicennia marina HOM05D000042 ORTHO05D000028 9.4e-14 81.3 108 41.7
Sopen01g011160 Solanum pennellii HOM05D001837 ORTHO05D013283 1.6e-13 80.5 193 31.1
Oeu058849.1 Olea europaea HOM05D000042 ORTHO05D000028 6.1e-13 78.6 193 28.5
QL08p034059 Quercus lobata HOM05D000042 ORTHO05D000028 1.4e-12 77.4 193 28.5
Actinidia24276 Actinidia chinensis HOM05D000042 ORTHO05D000028 1.5e-11 73.9 198 26.3
Haze_12940 Corylus avellana HOM05D000042 ORTHO05D000028 7.4e-11 71.6 107 40.2
CAN.G86.16 Capsicum annuum HOM05D000042 ORTHO05D013283 1.7e-10 70.5 65 55.4
TWI75G0328 Tripterygium wilfordii HOM05D001837 ORTHO05D000028 1.7e-10 70.5 113 38.1
Migut.K01032 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.8e-09 67.0 77 42.9
TWI36G0741 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.4e-09 66.6 108 36.1
Peaxi162Scf00848g00319 Petunia axillaris HOM05D004532 ORTHO05D000028 3.1e-09 66.2 100 38.0
CAN.G1054.7 Capsicum annuum HOM05D000042 ORTHO05D000028 1.6e-08 63.9 100 37.0
Solyc04g078300.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 1.6e-08 63.9 100 37.0
Sopen04g031890 Solanum pennellii HOM05D000042 ORTHO05D000028 1.6e-08 63.9 100 37.0
Glyma.13G086400 Glycine max HOM05D004532 ORTHO05D000028 3.5e-08 62.8 117 30.8
Dinv18542 Davidia involucrata HOM05D000042 ORTHO05D000028 4.5e-08 62.4 58 51.7
Mapoly0174s0011 Marchantia polymorpha HOM05D001837 ORTHO05D000028 4.5e-08 62.4 104 34.6
Rhsim06G0156500 Rhododendron simsii HOM05D000042 ORTHO05D000028 4.5e-08 62.4 118 33.1
MSTRG.1048 Avicennia marina HOM05D000042 ORTHO05D000028 5.9e-08 62.0 100 36.0
Solyc06g033825.1 Solanum lycopersicum HOM05D029645 ORTHO05D013283 5.9e-08 62.0 37 83.8
Potri.007G120002 Populus trichocarpa HOM05D000042 ORTHO05D000028 7.7e-08 61.6 73 39.7
arahy.Tifrunner.gnm1.ann1.XXIH72 Arachis hypogaea HOM05D004532 ORTHO05D000028 1.7e-07 60.5 108 32.4
Glyma.14G168700 Glycine max HOM05D004532 ORTHO05D000028 1.7e-07 60.5 119 32.8
Gorai.005G093000 Gossypium raimondii HOM05D004532 ORTHO05D000028 1.7e-07 60.5 111 30.6
Pp3c1_39780 Physcomitrium patens HOM05D001837 ORTHO05D000028 1.7e-07 60.5 90 41.1
Solyc06g042955.1 Solanum lycopersicum HOM05D029645 ORTHO05D390601 1.7e-07 60.5 41 75.6
Oeu061838.1 Olea europaea HOM05D000042 ORTHO05D000028 2.2e-07 60.1 100 37.0
Thhalv10019686m.g Eutrema salsugineum HOM05D004532 ORTHO05D000028 2.9e-07 59.7 109 33.0
FAN13G0077 Fragaria x ananassa HOM05D004532 ORTHO05D000028 5.0e-07 58.9 199 26.1
Psat5g040360 Pisum sativum HOM05D000042 ORTHO05D000028 5.0e-07 58.9 104 34.6
GSVIVG01009393001 Vitis vinifera HOM05D001837 ORTHO05D000028 5.0e-07 58.9 100 37.0
FAN04G1122 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.5e-07 58.5 199 25.6
Gohir.D02G089900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.5e-07 58.5 105 33.3
Gorai.005G100600 Gossypium raimondii HOM05D000042 ORTHO05D000028 6.5e-07 58.5 105 33.3
Pp3c9_1370 Physcomitrium patens HOM05D000042 ORTHO05D000028 6.5e-07 58.5 75 41.3
ATR0564G144 Amborella trichopoda HOM05D000042 ORTHO05D000028 8.5e-07 58.2 100 34.0
CSS0024802 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 8.5e-07 58.2 201 25.4
Cc10_g05320 Coffea canephora HOM05D001837 ORTHO05D000028 8.5e-07 58.2 100 36.0
Migut.C00517 Erythranthe guttata HOM05D000042 ORTHO05D000028 8.5e-07 58.2 82 37.8
FAN18G3338 Fragaria x ananassa HOM05D004532 ORTHO05D000028 8.5e-07 58.2 199 25.6
Lj1g0009703 Lotus japonicus HOM05D004532 ORTHO05D000028 8.5e-07 58.2 117 29.9
Oeu040891.2 Olea europaea HOM05D000042 ORTHO05D000028 8.5e-07 58.2 100 36.0
Phvul.008G170400 Phaseolus vulgaris HOM05D004532 ORTHO05D000028 8.5e-07 58.2 117 29.9
TPR.G25555 Trifolium pratense HOM05D000042 ORTHO05D000028 8.5e-07 58.2 104 35.6
Dinv35909 Davidia involucrata HOM05D001837 ORTHO05D000028 1.1e-06 57.8 100 37.0
Pp3c8_6890 Physcomitrium patens HOM05D000042 ORTHO05D000028 1.1e-06 57.8 75 42.7
PGR142G0618 Punica granatum HOM05D004532 ORTHO05D015616 1.1e-06 57.8 184 26.1
HanXRQChr09g0270311 Helianthus annuus HOM05D000042 ORTHO05D000028 1.5e-06 57.4 106 27.4
Lalb_Chr10g0102161 Lupinus albus HOM05D004532 ORTHO05D000028 1.5e-06 57.4 119 31.9
Pp3c14_22180 Physcomitrium patens HOM05D001837 ORTHO05D000028 1.5e-06 57.4 102 39.2
Pp3c1_39760 Physcomitrium patens HOM05D000042 ORTHO05D000028 1.5e-06 57.4 75 41.3
RcHm_v2.0_Chr7g0240061 Rosa chinensis HOM05D004532 ORTHO05D000028 1.5e-06 57.4 117 30.8
arahy.Tifrunner.gnm1.ann1.GBX0EQ Arachis hypogaea HOM05D004532 ORTHO05D000028 1.9e-06 57.0 117 30.8
BcaB08g37135 Brassica carinata HOM05D000042 ORTHO05D003657 1.9e-06 57.0 114 31.6
Cpa.g.sc21.133 Carica papaya HOM05D000042 ORTHO05D000028 1.9e-06 57.0 74 37.8
Ca_15922_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.9e-06 57.0 104 34.6
Hma1.2p1_0923F.1_g237150 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 1.9e-06 57.0 100 35.0
Pp3c3_31810 Physcomitrium patens HOM05D001837 ORTHO05D000028 1.9e-06 57.0 75 41.3
Sp5g33100 Schrenkiella parvula HOM05D004532 ORTHO05D000028 1.9e-06 57.0 116 33.6
Sc03g0002290 Simmondsia chinensis HOM05D004532 ORTHO05D000028 1.9e-06 57.0 108 29.6
Glyma.04G043800 Glycine max HOM05D000042 ORTHO05D000028 2.5e-06 56.6 104 33.7
Manes.02G156400 Manihot esculenta HOM05D004532 ORTHO05D000028 2.5e-06 56.6 111 32.4
Nitab4.5_0007275g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 2.5e-06 56.6 69 40.6
Oeu019130.1 Olea europaea HOM05D000042 ORTHO05D000028 2.5e-06 56.6 74 39.2
PGR102G2915 Punica granatum HOM05D004532 ORTHO05D000028 2.5e-06 56.6 108 31.5
QL12p035808 Quercus lobata HOM05D004532 ORTHO05D000028 2.5e-06 56.6 125 30.4
Solyc06g042945.1 Solanum lycopersicum HOM05D029645 ORTHO05D389904 2.5e-06 56.6 96 38.5
Thecc.08G112900 Theobroma cacao HOM05D004532 ORTHO05D000028 2.5e-06 56.6 129 28.7
Ah.02g122740 Amaranthus hybridus HOM05D000042 ORTHO05D000028 3.2e-06 56.2 120 32.5
CSS0035363 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.2e-06 56.2 74 37.8
CSS0046201 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.2e-06 56.2 74 37.8
Cpa.g.sc8.249 Carica papaya HOM05D000042 ORTHO05D013283 3.2e-06 56.2 89 32.6
Ciclev10001730m.g Citrus clementina HOM05D001837 ORTHO05D000028 3.2e-06 56.2 100 35.0
Duzib248G1072 Durio zibethinus HOM05D014263 ORTHO05D015616 3.2e-06 56.2 165 27.9
Duzib264G0957 Durio zibethinus HOM05D000042 ORTHO05D003657 3.2e-06 56.2 125 32.0
FAN27G2022 Fragaria x ananassa HOM05D000042 ORTHO05D000028 3.2e-06 56.2 103 34.0
Gohir.A11G199400 Gossypium hirsutum HOM05D004532 ORTHO05D000028 3.2e-06 56.2 112 31.2
Gohir.D11G224800 Gossypium hirsutum HOM05D004532 ORTHO05D000028 3.2e-06 56.2 112 31.2
Manes.13G090200 Manihot esculenta HOM05D004532 ORTHO05D000028 3.2e-06 56.2 103 32.0
Nitab4.5_0000934g0190 Nicotiana tabacum HOM05D000042 ORTHO05D000028 3.2e-06 56.2 69 39.1
PSO675G3764 Papaver somniferum HOM05D000042 ORTHO05D000028 3.2e-06 56.2 106 34.0
Potri.002G092300 Populus trichocarpa HOM05D004532 ORTHO05D000028 3.2e-06 56.2 110 30.9
Actinidia38089 Actinidia chinensis HOM05D000042 ORTHO05D000028 4.2e-06 55.8 74 37.8
Duzib264G0945 Durio zibethinus HOM05D004532 ORTHO05D000028 4.2e-06 55.8 112 31.2
Gorai.007G242000 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.2e-06 55.8 108 31.5
Lsat_1_v5_gn_6_109820 Lactuca sativa HOM05D001837 ORTHO05D000028 4.2e-06 55.8 74 37.8
Nn1g08850 Nelumbo nucifera HOM05D004532 ORTHO05D000028 4.2e-06 55.8 108 30.6
Pp3c17_13070 Physcomitrium patens HOM05D000042 ORTHO05D000028 4.2e-06 55.8 75 40.0
QL02p002903 Quercus lobata HOM05D000042 ORTHO05D000028 4.2e-06 55.8 74 37.8
HPP92_019236 Vanilla planifolia HOM05D004532 ORTHO05D000028 4.2e-06 55.8 190 25.8
FvH4_5g38110 Fragaria vesca HOM05D004532 ORTHO05D000028 5.5e-06 55.5 199 25.6
Aa31LG4G8020 Aethionema arabicum HOM05D004532 ORTHO05D000028 7.2e-06 55.1 109 32.1
Thhalv10019795m.g Eutrema salsugineum HOM05D004532 ORTHO05D000028 7.2e-06 55.1 206 28.2
Medtr3g102570 Medicago truncatula HOM05D001837 ORTHO05D000028 7.2e-06 55.1 104 32.7
Psat2g075120 Pisum sativum HOM05D004532 ORTHO05D000028 7.2e-06 55.1 109 30.3
TWI36G0956 Tripterygium wilfordii HOM05D004532 ORTHO05D000028 7.2e-06 55.1 109 31.2
Ciclev10003964m.g Citrus clementina HOM05D004532 ORTHO05D000028 9.4e-06 54.7 121 30.6
CsaV3_4G030750 Cucumis sativus L. HOM05D004532 ORTHO05D000028 9.4e-06 54.7 107 30.8
Dinv13046 Davidia involucrata HOM05D004532 ORTHO05D000028 9.4e-06 54.7 96 32.3
Dinv21942 Davidia involucrata HOM05D004532 ORTHO05D000028 9.4e-06 54.7 108 31.5
PSO210G0302 Papaver somniferum HOM05D004532 ORTHO05D000028 9.4e-06 54.7 108 31.5
PSO447G0055 Papaver somniferum HOM05D004532 ORTHO05D000028 9.4e-06 54.7 108 31.5
Pp3c12_22890 Physcomitrium patens HOM05D000042 ORTHO05D000028 9.4e-06 54.7 75 38.7
Sp1g19630 Schrenkiella parvula HOM05D004532 ORTHO05D000028 9.4e-06 54.7 109 32.1
Solyc02g065730.2 Solanum lycopersicum HOM05D000042 ORTHO05D000028 9.4e-06 54.7 72 34.7


User provided reference genes

Program Settings