Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.4e-71 273.1 162 100.0
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 1.9e-52 209.5 162 84.0
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.5e-49 199.9 162 75.9
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 2.7e-43 179.1 166 71.1
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 4.4e-25 118.6 164 49.4
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 9.7e-25 117.5 182 46.7
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.6e-22 110.2 168 45.8
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 7.7e-22 107.8 167 47.3
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 1.5e-20 103.6 160 51.9
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.1e-19 99.8 165 49.7
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 4.7e-19 98.6 167 49.1
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.3e-16 90.5 187 43.9
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 2.8e-16 89.4 59 74.6
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 2.8e-16 89.4 161 47.2
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 1.1e-15 87.4 143 46.2
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.1e-15 87.4 161 44.1
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.4e-15 87.0 161 44.1
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.4e-15 87.0 68 69.1
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 1.8e-15 86.7 152 45.4
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 1.6e-14 83.6 169 44.4
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.0e-14 83.2 161 42.9
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.7e-14 82.8 163 41.7
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 4.5e-14 82.0 65 67.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 4.5e-14 82.0 65 67.7
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 5.9e-14 81.6 60 70.0
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 7.7e-14 81.3 166 41.0
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 1.3e-13 80.5 143 42.7
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 2.2e-13 79.7 164 40.2
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 2.9e-13 79.3 167 38.9
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 5.0e-13 78.6 55 74.5
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 1.9e-12 76.6 56 71.4
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.9e-12 76.6 163 41.7
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 2.5e-12 76.3 71 63.4
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 4.2e-12 75.5 132 44.7
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 4.2e-12 75.5 132 44.7
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 4.2e-12 75.5 132 44.7
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 4.2e-12 75.5 80 56.2
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 4.2e-12 75.5 173 41.0
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 4.2e-12 75.5 173 38.7
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 5.5e-12 75.1 68 61.8
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 5.5e-12 75.1 142 43.7
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 5.5e-12 75.1 109 44.0
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 5.5e-12 75.1 59 66.1
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 5.5e-12 75.1 55 69.1
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.2e-12 74.7 60 63.3
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.2e-12 74.7 60 63.3
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 9.5e-12 74.3 67 64.2
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 9.5e-12 74.3 168 37.5
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.2e-11 73.9 91 51.6
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.1e-11 73.2 163 38.0
Nitab4.5_0007218g0010 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.6e-11 72.4 156 44.9
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 3.6e-11 72.4 59 61.0
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 4.7e-11 72.0 161 40.4
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 4.7e-11 72.0 71 59.2
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 6.1e-11 71.6 148 43.2
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 6.1e-11 71.6 74 55.4
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.0e-10 70.9 67 58.2
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.0e-10 70.9 168 38.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.4e-10 70.5 67 59.7
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.4e-10 70.5 51 66.7
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.8e-10 70.1 72 55.6
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.8e-10 70.1 166 38.6
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.3e-10 69.7 68 55.9
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.3e-10 69.7 68 55.9
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 2.3e-10 69.7 165 37.6
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.3e-10 69.7 76 50.0
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 2.3e-10 69.7 51 66.7
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.3e-10 69.7 59 59.3
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.3e-10 69.7 167 39.5
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 4.0e-10 68.9 171 37.4
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 6.8e-10 68.2 73 54.8
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 8.8e-10 67.8 136 39.0
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 8.8e-10 67.8 75 58.7
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 8.8e-10 67.8 88 50.0
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 8.8e-10 67.8 170 41.2
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.5e-09 67.0 63 54.0
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.5e-09 67.0 72 54.2
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.0e-09 66.6 128 43.8
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 2.0e-09 66.6 87 43.7
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 3.4e-09 65.9 172 37.8
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 5.7e-09 65.1 42 73.8
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 5.7e-09 65.1 176 42.0
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 5.7e-09 65.1 159 40.3
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 7.5e-09 64.7 54 57.4
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 9.8e-09 64.3 179 37.4
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-08 63.9 71 52.1
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-08 63.9 71 52.1
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.7e-08 63.5 155 39.4
Nn2g13093 Nelumbo nucifera HOM05D004188 ORTHO05D004445 1.7e-08 63.5 170 37.1
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 2.2e-08 63.2 165 41.2
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.8e-08 62.8 74 54.1
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.8e-08 62.8 163 36.2
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.7e-08 62.4 141 39.0
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.7e-08 62.4 146 36.3
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 4.9e-08 62.0 170 37.6
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 4.9e-08 62.0 162 42.0
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 6.3e-08 61.6 88 50.0
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 6.3e-08 61.6 76 44.7
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 8.3e-08 61.2 58 51.7
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 8.3e-08 61.2 74 51.4
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 1.1e-07 60.8 79 49.4
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 1.4e-07 60.5 167 39.5
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 1.4e-07 60.5 152 42.1
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 1.8e-07 60.1 66 54.5
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 1.8e-07 60.1 170 37.6
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.4e-07 59.7 172 41.9
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 3.1e-07 59.3 138 39.9
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 5.4e-07 58.5 59 52.5
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 9.2e-07 57.8 88 42.0
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 1.2e-06 57.4 77 44.2
Hma1.2p1_0058F.1_g032570 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 2.0e-06 56.6 35 74.3
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 2.0e-06 56.6 71 42.3
MSTRG.17805 Avicennia marina HOM05D004188 ORTHO05D004445 2.7e-06 56.2 36 72.2
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 4.5e-06 55.5 110 40.9
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 5.9e-06 55.1 46 52.2
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 7.7e-06 54.7 57 50.9


User provided reference genes

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