Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009820.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 7.6e-118 427.2 213 100.0
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 1.2e-99 366.7 199 93.5
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 4.3e-97 358.2 200 89.5
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 4.5e-94 348.2 204 84.8
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 4.5e-94 348.2 204 86.3
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.3e-93 346.7 204 85.8
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 1.3e-93 346.7 204 85.8
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.7e-93 346.3 202 86.1
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.2e-93 345.9 203 85.7
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 2.9e-93 345.5 198 86.9
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 3.8e-93 345.1 208 84.1
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 4.9e-93 344.7 202 84.7
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 6.4e-93 344.4 201 87.1
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 1.1e-92 343.6 207 83.1
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 1.4e-92 343.2 208 82.7
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 1.9e-92 342.8 199 87.9
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 1.9e-92 342.8 201 85.1
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.4e-92 342.4 212 81.6
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 5.4e-92 341.3 205 82.4
Actinidia21429 Actinidia chinensis HOM05D003197 ORTHO05D003769 7.1e-92 340.9 207 84.1
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 7.1e-92 340.9 206 83.0
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 7.1e-92 340.9 206 83.0
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 7.1e-92 340.9 205 82.4
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 7.1e-92 340.9 204 84.3
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 9.3e-92 340.5 207 84.1
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 1.2e-91 340.1 202 85.6
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 1.6e-91 339.7 202 84.2
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 1.6e-91 339.7 202 84.2
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 1.6e-91 339.7 202 84.7
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 1.6e-91 339.7 204 83.8
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 1.6e-91 339.7 206 82.5
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 2.1e-91 339.3 207 83.6
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 2.1e-91 339.3 204 82.8
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 2.7e-91 339.0 202 84.2
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 2.7e-91 339.0 202 84.2
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 2.7e-91 339.0 202 84.2
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 2.7e-91 339.0 204 84.3
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 3.5e-91 338.6 202 83.7
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 3.5e-91 338.6 205 83.4
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 6.0e-91 337.8 202 83.7
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 6.0e-91 337.8 202 83.7
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 6.0e-91 337.8 202 83.7
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 6.0e-91 337.8 206 82.5
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 7.9e-91 337.4 202 83.7
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 7.9e-91 337.4 206 82.0
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 7.9e-91 337.4 203 81.8
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 7.9e-91 337.4 205 82.9
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 1.0e-90 337.0 204 84.8
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.0e-90 337.0 174 92.5
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 1.0e-90 337.0 201 84.6
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 1.0e-90 337.0 202 83.7
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 1.3e-90 336.7 202 83.7
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 1.8e-90 336.3 206 82.5
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 2.3e-90 335.9 206 82.5
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 2.3e-90 335.9 203 82.8
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 3.0e-90 335.5 206 81.6
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 3.9e-90 335.1 198 84.3
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 3.9e-90 335.1 204 84.3
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 3.9e-90 335.1 203 80.8
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 3.9e-90 335.1 200 84.0
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 3.9e-90 335.1 202 84.7
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 5.1e-90 334.7 207 81.2
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 5.1e-90 334.7 202 83.2
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 5.1e-90 334.7 206 80.6
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 5.1e-90 334.7 206 81.1
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 5.1e-90 334.7 198 84.3
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 5.1e-90 334.7 205 80.5
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 6.7e-90 334.3 203 83.3
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 1.1e-89 333.6 200 84.0
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 1.1e-89 333.6 205 82.4
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 1.1e-89 333.6 177 91.0
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 1.1e-89 333.6 200 83.5
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 1.1e-89 333.6 207 81.6
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 1.5e-89 333.2 203 81.8
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 1.5e-89 333.2 206 82.0
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 1.5e-89 333.2 204 81.9
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 2.5e-89 332.4 207 80.2
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 2.5e-89 332.4 205 81.0
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 2.5e-89 332.4 204 81.4
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 2.5e-89 332.4 185 87.6
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 4.3e-89 331.6 203 80.8
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 4.3e-89 331.6 224 76.3
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 5.6e-89 331.3 186 85.5
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 5.6e-89 331.3 204 81.4
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 7.4e-89 330.9 202 82.7
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 7.4e-89 330.9 206 81.6
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 9.6e-89 330.5 205 80.5
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 1.6e-88 329.7 202 81.2
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 1.6e-88 329.7 200 82.5
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 1.6e-88 329.7 202 83.2
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 2.1e-88 329.3 198 82.8
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 2.1e-88 329.3 205 80.0
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 2.8e-88 328.9 202 81.7
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 3.7e-88 328.6 205 81.0
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 3.7e-88 328.6 206 81.1
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 3.7e-88 328.6 202 82.2
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 4.8e-88 328.2 206 81.1
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 4.8e-88 328.2 205 80.0
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 6.2e-88 327.8 174 89.7
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 8.1e-88 327.4 207 79.7
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 8.1e-88 327.4 207 79.7
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 8.1e-88 327.4 198 82.3
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 8.1e-88 327.4 198 82.3
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 1.8e-87 326.2 205 80.0
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 3.1e-87 325.5 181 86.2
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 9.0e-87 323.9 205 79.5
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 9.0e-87 323.9 193 81.3
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 1.5e-86 323.2 202 81.7
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.6e-86 322.4 172 89.5
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 4.5e-86 321.6 177 87.6
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 7.6e-86 320.9 174 89.1
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 7.6e-86 320.9 178 87.1
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 1.0e-85 320.5 177 87.0
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 1.0e-85 320.5 172 89.0
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 1.0e-85 320.5 177 86.4
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 1.3e-85 320.1 205 79.5
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 2.2e-85 319.3 173 88.4
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 2.2e-85 319.3 174 88.5
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 2.9e-85 318.9 176 87.5
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 2.9e-85 318.9 176 86.9
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 2.5e-84 315.8 172 87.8
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 3.2e-84 315.5 177 84.7
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 3.2e-84 315.5 203 80.3
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 1.3e-82 310.1 205 76.6
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 1.8e-82 309.7 209 75.1
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 3.0e-82 308.9 251 66.5
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 1.1e-81 307.0 170 86.5
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.5e-81 305.8 202 78.7
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 5.7e-81 304.7 184 81.5
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.1e-80 302.8 206 74.8
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 1.2e-78 297.0 155 92.3
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 2.0e-78 296.2 170 83.5
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 1.8e-74 283.1 202 74.8
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 1.5e-73 280.0 156 85.3
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 3.1e-71 272.3 173 78.0
Oeu017666.1 Olea europaea HOM05D003197 ORTHO05D003769 2.6e-70 269.2 206 69.4
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 5.9e-70 268.1 203 70.9
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 6.5e-69 264.6 196 66.3
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 1.6e-67 260.0 171 73.7
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 1.6e-67 260.0 171 73.7
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 6.3e-64 248.1 133 89.5
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 1.2e-62 243.8 186 64.5
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 1.0e-61 240.7 176 67.0
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.5e-60 236.1 230 59.1
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 4.2e-60 235.3 190 64.2
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 1.8e-58 229.9 175 65.7
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 7.0e-55 218.0 113 92.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 3.8e-53 212.2 224 52.7
Lalb_Chr02g0146551 Lupinus albus HOM05D003197 ORTHO05D003769 1.5e-52 210.3 120 85.0
A04p34960 Brassica napus HOM05D003197 ORTHO05D003769 1.4e-50 203.8 198 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 3.5e-46 189.1 127 75.6
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 5.9e-46 188.3 165 61.2
Haze_27310 Corylus avellana HOM05D003197 ORTHO05D003769 1.0e-45 187.6 183 53.6
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 1.0e-45 187.6 172 56.4
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 2.9e-45 186.0 270 42.2
MD01G1075600 Malus domestica HOM05D003197 ORTHO05D003769 1.5e-44 183.7 103 84.5
Zm00001eb308640 Zea mays HOM05D003295 ORTHO05D003769 8.0e-43 177.9 103 79.6
HanXRQChr06g0177421 Helianthus annuus HOM05D003197 ORTHO05D003769 8.8e-42 174.5 92 90.2
DCAR_006747 Daucus carota HOM05D003197 ORTHO05D003769 1.5e-41 173.7 109 78.0
Zm00001eb165980 Zea mays HOM05D003197 ORTHO05D003769 2.0e-41 173.3 163 56.4
MSTRG.21655 Avicennia marina HOM05D003197 ORTHO05D003769 3.4e-41 172.6 111 82.0
CDE01G0127 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 1.3e-40 170.6 113 75.2
BNapus_Darmor_BZH_scaffold_122p00230 Brassica napus HOM05D003197 ORTHO05D003769 1.5e-36 157.1 118 72.0
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 5.2e-26 122.1 116 61.2
CSS0010820 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.8e-23 113.6 66 81.8
CSS0034523 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.8e-23 113.6 66 81.8
Lalb_Chr02g0146541 Lupinus albus HOM05D003197 ORTHO05D003769 1.6e-22 110.5 68 79.4
CSS0042924 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.5e-20 103.2 66 75.8
MCO04G254 Micromonas commoda HOM05D003197 ORTHO05D003769 2.8e-19 99.8 164 36.6
CSS0003480 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 6.2e-19 98.6 50 94.0
CSS0034310 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 6.2e-19 98.6 50 94.0
CSS0046460 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 6.2e-19 98.6 66 74.2
CSS0006143 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 5.2e-18 95.5 50 92.0
CSS0021522 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 5.2e-18 95.5 50 92.0
SHI31149 Sapria himalayana HOM05D003197 ORTHO05D003769 6.8e-18 95.1 55 78.2
Lj2g0021265 Lotus japonicus HOM05D003197 ORTHO05D003769 1.5e-17 94.0 89 58.4
CBR_g34165 Chara braunii HOM05D003197 ORTHO05D003769 1.7e-16 90.5 133 41.4
Actinidia25190 Actinidia chinensis HOM05D003197 ORTHO05D003769 3.2e-15 86.3 57 73.7
BcaC09g49737 Brassica carinata HOM05D003197 ORTHO05D003769 3.2e-15 86.3 86 55.8
C07p40810 Brassica napus HOM05D003197 ORTHO05D003769 2.0e-14 83.6 86 55.8
C01p33450 Brassica napus HOM05D003197 ORTHO05D003769 2.7e-14 83.2 86 55.8
BraA01t04618Z Brassica rapa HOM05D003197 ORTHO05D003769 2.8e-11 73.2 56 66.1
BcaB06g29010 Brassica carinata HOM05D000232 ORTHO05D000145 5.4e-07 58.9 71 47.9


User provided reference genes

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