Gene: Sopen09g030240

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g030240
  • Transcript Identifier Sopen09g030240.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 78623505-78631578 : negative

Gene Family Information

  • ID HOM05D003197
  • #Genes/#Species 214/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g030240.1

Descriptions

  • Description Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth. | FUMARASE 2 (FUM2) | FUNCTIONS IN: fumarate hydratase activity, protein binding | INVOLVED IN: nitrate assimilation, response to salt stress, fumarate metabolic process | LOCATED IN: cytosol, mitochondrion | EXPRESSED IN: male gametophyte, guard cell, root, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II , L-Aspartase-like , Fumarate lyase, conserved site , Lyase 1, N-terminal , Fumarase C, C-terminal , Fumarate lyase | BEST Arabidopsis thaliana protein match is: fumarase 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006099
IEA
InterProtricarboxylic acid cycle
GO:0006106
IEA
InterProfumarate metabolic process
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT2G47510
GO:0006108
ISO
PLAZA Integrative Orthologymalate metabolic process AT2G47510
GO:0010109
ISO
PLAZA Integrative Orthologyregulation of photosynthesis AT5G50950
GO:0051262
ISO
PLAZA Integrative Orthologyprotein tetramerization AT2G47510
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT5G50950
GO:0048868
ISO
PLAZA Integrative Orthologypollen tube development AT2G47510
GO:0042128
ISO
PLAZA Integrative Orthologynitrate assimilation AT5G50950

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
InterProlyase activity
GO:0003824
IEA
InterProcatalytic activity
GO:0004333
IEA
InterProfumarate hydratase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G47510

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045239
IEA
InterProtricarboxylic acid cycle enzyme complex
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT2G47510
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G50950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018951 Fumarase C, C-terminal
IPR024083 Fumarase/histidase, N-terminal
IPR022761 Fumarate lyase, N-terminal
IPR000362 Fumarate lyase family
IPR008948 L-Aspartase-like
IPR005677 Fumarate hydratase, class II
Mapman id Description
2.3.7 Cellular respiration.tricarboxylic acid cycle.fumarase